Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is bphP [H]
Identifier: 120612169
GI number: 120612169
Start: 3889795
End: 3890889
Strand: Direct
Name: bphP [H]
Synonym: Aave_3518
Alternate gene names: 120612169
Gene position: 3889795-3890889 (Clockwise)
Preceding gene: 120612168
Following gene: 120612172
Centisome position: 72.67
GC content: 64.2
Gene sequence:
>1095_bases ATGCGACTTGCAGCCTTTTTGGAATCGACCCGGGAACGCATCCTGGAAGAGGCTGTCGCATACGCCAGAACCATTCCCGC ACTGCGAAAAACCGACGACAAGGCACTGCGCGACCATTTGCCACAGATCCTGGAGGCCATTTCAGCAGACCTGCGGACCC CGCAAACCAGGGCGCAGTCCATTCAAAAGTCGCATGGCAACGCACCACCCGGTTCAACGCAAAGCTCGGCGCAAACCCAC GGATTGATGCGTGCGCAGAGCGGAATCGACATCGAGCAACTGGTTGCCGAGTTCAGGGCGCTGCGGTCGAGCATCCTCCG GTTATGGAGCGAGGCCCATTCTGCAGGTCCGGACACCATCCATGACATCACGCGGTTCAATGAGGCGATCGACCAGGCCG TGGCGGAGTCGGTGCAGTTCTACGCCCAGGAGCGCGAGCGTTGGCGCGAGATTTTTCTGGGCGTCCTCGGGCATGATCTG CGTGGGCCCCTGAATGCCGTCGCCCTGATGGTGGAGCTCATGGCCAAGCAGGGCATCGCGCCTGTCCAGCAGACTGCCAT GCTCGAGCGAGGGGTCCACCGCATGACGACCCTCCTGGACTCGCTCCTGGAGTACAGCCGGTCCAACCTGGGCGTCGGCA TGGTGTTGCATCTGGCGCCGACCGATCTGGCAGCGGCTTGCAGCGAGGAGGTTCAGCTCCAGCGCCTCGCCCATCCGGGC GCACGGATCGAGTTTTCGGCACAAGGGCCGACGGAGGGAACATACGACGCGTCCCGGGTCCGGGAGGCGCTCGGCAATCT CGTTTCCAACGCTGTCAAGCACGGAGACGCCGGGGGATCCATCACGGTCCGCGTCAAGGGCACCGCGCATGGGGTGGCCA TCTCGGTCGAAAACGCCGGTGAACTGGCACCGGAGAGCATTGACGATCTGTTCGAGCCGCTTCGGCGCGGGCTTCATGGT CCGGGCACAGACCGCACGCACCTGGGGCTTGGGCTGTTCATCGCGCGGCAGATCGCACGCGCCCACCACGGCGACGCCAC GGGCCATTGCGAGAATCACCAGGTGCGCTTCACGCTGGAGCTCCCGAAGGGCTGA
Upstream 100 bases:
>100_bases CGGAAAAATGCGTCGAAGCGCAGGATGAGGGTCTGTTCAGGGAAGGCGGGACACAGTACCGTTCACGGCCGATATTTGCG ATGAGAAAGGACAGACGATC
Downstream 100 bases:
>100_bases GCCGGGCGGTGCAACCGCCCCGTGCCGTCAGGCCTTCACCAGCAGGTCGCCCGTGATGTCGGAGACCTTCGCGACGCTGG TGAGCGTCATCGCCACGCGC
Product: histidine kinase
Products: NA
Alternate protein names: Phytochrome-like protein [H]
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MRLAAFLESTRERILEEAVAYARTIPALRKTDDKALRDHLPQILEAISADLRTPQTRAQSIQKSHGNAPPGSTQSSAQTH GLMRAQSGIDIEQLVAEFRALRSSILRLWSEAHSAGPDTIHDITRFNEAIDQAVAESVQFYAQERERWREIFLGVLGHDL RGPLNAVALMVELMAKQGIAPVQQTAMLERGVHRMTTLLDSLLEYSRSNLGVGMVLHLAPTDLAAACSEEVQLQRLAHPG ARIEFSAQGPTEGTYDASRVREALGNLVSNAVKHGDAGGSITVRVKGTAHGVAISVENAGELAPESIDDLFEPLRRGLHG PGTDRTHLGLGLFIARQIARAHHGDATGHCENHQVRFTLELPKG
Sequences:
>Translated_364_residues MRLAAFLESTRERILEEAVAYARTIPALRKTDDKALRDHLPQILEAISADLRTPQTRAQSIQKSHGNAPPGSTQSSAQTH GLMRAQSGIDIEQLVAEFRALRSSILRLWSEAHSAGPDTIHDITRFNEAIDQAVAESVQFYAQERERWREIFLGVLGHDL RGPLNAVALMVELMAKQGIAPVQQTAMLERGVHRMTTLLDSLLEYSRSNLGVGMVLHLAPTDLAAACSEEVQLQRLAHPG ARIEFSAQGPTEGTYDASRVREALGNLVSNAVKHGDAGGSITVRVKGTAHGVAISVENAGELAPESIDDLFEPLRRGLHG PGTDRTHLGLGLFIARQIARAHHGDATGHCENHQVRFTLELPKG >Mature_364_residues MRLAAFLESTRERILEEAVAYARTIPALRKTDDKALRDHLPQILEAISADLRTPQTRAQSIQKSHGNAPPGSTQSSAQTH GLMRAQSGIDIEQLVAEFRALRSSILRLWSEAHSAGPDTIHDITRFNEAIDQAVAESVQFYAQERERWREIFLGVLGHDL RGPLNAVALMVELMAKQGIAPVQQTAMLERGVHRMTTLLDSLLEYSRSNLGVGMVLHLAPTDLAAACSEEVQLQRLAHPG ARIEFSAQGPTEGTYDASRVREALGNLVSNAVKHGDAGGSITVRVKGTAHGVAISVENAGELAPESIDDLFEPLRRGLHG PGTDRTHLGLGLFIARQIARAHHGDATGHCENHQVRFTLELPKG
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=226, Percent_Identity=26.5486725663717, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI87082128, Length=240, Percent_Identity=28.75, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786600, Length=206, Percent_Identity=28.6407766990291, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 39618; Mature: 39618
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLAAFLESTRERILEEAVAYARTIPALRKTDDKALRDHLPQILEAISADLRTPQTRAQS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH IQKSHGNAPPGSTQSSAQTHGLMRAQSGIDIEQLVAEFRALRSSILRLWSEAHSAGPDTI HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH HDITRFNEAIDQAVAESVQFYAQERERWREIFLGVLGHDLRGPLNAVALMVELMAKQGIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC PVQQTAMLERGVHRMTTLLDSLLEYSRSNLGVGMVLHLAPTDLAAACSEEVQLQRLAHPG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC ARIEFSAQGPTEGTYDASRVREALGNLVSNAVKHGDAGGSITVRVKGTAHGVAISVENAG CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCC ELAPESIDDLFEPLRRGLHGPGTDRTHLGLGLFIARQIARAHHGDATGHCENHQVRFTLE CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE LPKG CCCC >Mature Secondary Structure MRLAAFLESTRERILEEAVAYARTIPALRKTDDKALRDHLPQILEAISADLRTPQTRAQS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH IQKSHGNAPPGSTQSSAQTHGLMRAQSGIDIEQLVAEFRALRSSILRLWSEAHSAGPDTI HHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH HDITRFNEAIDQAVAESVQFYAQERERWREIFLGVLGHDLRGPLNAVALMVELMAKQGIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC PVQQTAMLERGVHRMTTLLDSLLEYSRSNLGVGMVLHLAPTDLAAACSEEVQLQRLAHPG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCC ARIEFSAQGPTEGTYDASRVREALGNLVSNAVKHGDAGGSITVRVKGTAHGVAISVENAG CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCC ELAPESIDDLFEPLRRGLHGPGTDRTHLGLGLFIARQIARAHHGDATGHCENHQVRFTLE CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE LPKG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]