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The map label for this gene is cspB [C]

Identifier: 120612145

GI number: 120612145

Start: 3861825

End: 3862499

Strand: Reverse

Name: cspB [C]

Synonym: Aave_3494

Alternate gene names: 120612145

Gene position: 3862499-3861825 (Counterclockwise)

Preceding gene: 120612146

Following gene: 120612143

Centisome position: 72.16

GC content: 76.15

Gene sequence:

>675_bases
ATGCAGTTCGACGGCGTCATCGCGTCCTGGAACGACGCGCGGGGTTTCGGCTTCATCGAGCCGCTGCAGGGCGGCGATCC
GGTGTTCGTGCACATCAAGGCCTTCCAGGGCGGCGCGCCCCGGCCCCAGGCCGGCCAGCGGGTGCGCTTCGCCGTGGAGG
CCGGCCCCGGCGGCCGCAAGCGGGCCTGCCGCGTCGAATCCCTGCCGCCCGCGGCGCGCGCGTCCGCCGCCCGGGCGCCC
GCCATGGCGCCCCGGCCGGCCCGTCCCCGCGGCCGCCACGGGGCGCACGGCGGCTCCGCGCCATGGGGCACCGCGAGCCT
GCTCGTGCTGCCGGCCTATGCCGTGTACTGCGTGGCGTTGGCGGTCTTCGGCACGATGCCCCGCTGGTTTCCGGCGGCCT
GCCTGGGCCTGAGCGCCTGGACCTACCTCGTGTACTGGCGGGACAAGCGGGCCGCGGAACAGGCGGCCTGGCGCACGTCC
GAGAAGACCCTGCATCTGCTGGCGCTGGCCGGAGGCTGGCCCGGGGCCCTGCTGGCGCAGCAGGTGCTGCGCCACAAGTC
CGCCAAGCGGCCCTTCCGCATCGTGTTCTGGGCCACCGTGGTGCTCCATGCCGCGGCGCTCGGCTGGCTGTGCTCGCCGC
ACGGCCATGGCCTGCGCGCGGCCCTGCCTGCCTGA

Upstream 100 bases:

>100_bases
CCAGGTACTGGCCGGGGTGGAGTTCACCGCCACCAGCGCGGAGTTCGATGCCCAGGTGCGGCACTTCGTGCAGGGCATGG
TGGCCCCCGGCTGACGGCGC

Downstream 100 bases:

>100_bases
AGCTGGCGCTGAAGCGGCCGGCGCGGGCGTTTCAGCCCGGGCCCGCGAGCATGTCCGCGAGCGCGCCCAGGTCCGTGCAG
TGCAGGTCGTTGCCCGGCCG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MQFDGVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQAGQRVRFAVEAGPGGRKRACRVESLPPAARASAARAP
AMAPRPARPRGRHGAHGGSAPWGTASLLVLPAYAVYCVALAVFGTMPRWFPAACLGLSAWTYLVYWRDKRAAEQAAWRTS
EKTLHLLALAGGWPGALLAQQVLRHKSAKRPFRIVFWATVVLHAAALGWLCSPHGHGLRAALPA

Sequences:

>Translated_224_residues
MQFDGVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQAGQRVRFAVEAGPGGRKRACRVESLPPAARASAARAP
AMAPRPARPRGRHGAHGGSAPWGTASLLVLPAYAVYCVALAVFGTMPRWFPAACLGLSAWTYLVYWRDKRAAEQAAWRTS
EKTLHLLALAGGWPGALLAQQVLRHKSAKRPFRIVFWATVVLHAAALGWLCSPHGHGLRAALPA
>Mature_224_residues
MQFDGVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQAGQRVRFAVEAGPGGRKRACRVESLPPAARASAARAP
AMAPRPARPRGRHGAHGGSAPWGTASLLVLPAYAVYCVALAVFGTMPRWFPAACLGLSAWTYLVYWRDKRAAEQAAWRTS
EKTLHLLALAGGWPGALLAQQVLRHKSAKRPFRIVFWATVVLHAAALGWLCSPHGHGLRAALPA

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23993; Mature: 23993

Theoretical pI: Translated: 11.82; Mature: 11.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDGVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQAGQRVRFAVEAGPGGRK
CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCC
RACRVESLPPAARASAARAPAMAPRPARPRGRHGAHGGSAPWGTASLLVLPAYAVYCVAL
CEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AVFGTMPRWFPAACLGLSAWTYLVYWRDKRAAEQAAWRTSEKTLHLLALAGGWPGALLAQ
HHHHCCCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
QVLRHKSAKRPFRIVFWATVVLHAAALGWLCSPHGHGLRAALPA
HHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
>Mature Secondary Structure
MQFDGVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPRPQAGQRVRFAVEAGPGGRK
CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCC
RACRVESLPPAARASAARAPAMAPRPARPRGRHGAHGGSAPWGTASLLVLPAYAVYCVAL
CEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AVFGTMPRWFPAACLGLSAWTYLVYWRDKRAAEQAAWRTSEKTLHLLALAGGWPGALLAQ
HHHHCCCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHH
QVLRHKSAKRPFRIVFWATVVLHAAALGWLCSPHGHGLRAALPA
HHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA