Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ydhP [H]
Identifier: 120612143
GI number: 120612143
Start: 3859610
End: 3860860
Strand: Reverse
Name: ydhP [H]
Synonym: Aave_3492
Alternate gene names: 120612143
Gene position: 3860860-3859610 (Counterclockwise)
Preceding gene: 120612145
Following gene: 120612141
Centisome position: 72.13
GC content: 74.02
Gene sequence:
>1251_bases ATGACCACGCCTTCCCTGCCCCGCGATGCCGCCGAAGCCCCGGCGTCCGCCTCTTCCACGGCCACTCCACGTCCGCGGGA CGACCGCACCCTGCTGCGCGCCGTGCTCGCGCTGGGCCTGGGCGGCTTTTCCATCGGCACGGGCGAATTCGTCATCATGG GCCTGCTGCCCGAGGTGGCGCGGGATATCGGCGTGACCATCCCGCAGGCCGGGCATGTCATCAGCGCCTATGCGCTGGGC GTGGTCATCGGCGCGCCCGTGCTGGCCGTGCTCGCGGCGCGCTGGGGCCGGCGCGCACTGCTCATCGCGCTGATGGCCGT CTATGCGCTGGGCAATTTCGCCTCCGCGATGGCGCCGGGCTACCTGTCGCTGAACCTGCTGCGCTTCGTCACCGGCCTGC CGCACGGCACCTATTTCGGAGTGGCCGCGCTGGTGGCCGCGTCGCTCGCACCGCCGGGCCGGCGCGCGAGCGCGGTGGGC CTGGTGATGCTGGGCCTGACGGGGGCCACGCTCGCGGGCGTGCCCATCGCGGCGGCGCTGGGCCAGCATTTCGGCTGGCG CGCGGCCTTCGTGTTCGTCGGGGCGATCGCGGTGCTGGCGATGGCGATGGTGCGCCGGGGCGTGCCCTACATGCCGCCCG ACGCGGCCGCGAGCCCCTGGCGGGAGCTCGGGGCGCTGCGGCGCAAGCAGGTCTGGCTCACGCTCGGCATCGGGGCCATC GGCTTCGGCGGCATGTTCTCGGTCTTCAGCTACATCAAGCCCACGCTCACCGAAGTGGCGGGCTTGCCCGTCGGCGGCGT GCCTTTCGTGCTGGCGCTCTTCGGCGCGGGCATGGTGGCGGGCAACCTCGTGGGCGCCCGGCTGGCGGATCGTGCCCTGA TGCGCACCATCGGCGGCCTGCTGGGCTGGTCGGTGGCGGTACTGGGCGGCTTCGTCTTCGCCGCGCACCACGTGGTCACG GCGGCGGTGGCGACCTTTCTCCTCGGGACCATCGTGGCCATCGGACCGGCCCTGCAGATCCGGCTCATGGACGTGGCCGG CGACGCGCAGACCCTGGCCGCCGCGCTCAACCATTCGGCCTTCAACTGCGCGAACGCGCTCGGCGCCTGGCTGGGCGGCG TGGCCATCGCGGCCGGCCTGGGCTGGACGTCCACCGGCTGGGTGGGCGTGCTGCTCGCCATCGGCGGGCTGGCCGTGTTC GCCGCATCGCTGGCCGCGCAGCGCAGCGCCTCCCGGCCGCCCGCGCCCTGA
Upstream 100 bases:
>100_bases CAGGGCGTGATATGTTCCACCGACCCTGGGGTTAACCCTGAATACTCCCCTGCGCGCCCGGCCGTCCTCCCTGGCCGGCG CGCCCCCACGCCGCCTTTCC
Downstream 100 bases:
>100_bases CTCAGGCGGCCGCGCCGGCGCGGCTGCGCTGCCAGTGGCCCACGCCGTTCGTCACCAGCACGCAGCAGACCAGCCAGGTG CCTCCGGTGACCCAGCCCGC
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MTTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVARDIGVTIPQAGHVISAYALG VVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPGYLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVG LVMLGLTGATLAGVPIAAALGQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGLLGWSVAVLGGFVFAAHHVVT AAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSAFNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVF AASLAAQRSASRPPAP
Sequences:
>Translated_416_residues MTTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVARDIGVTIPQAGHVISAYALG VVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPGYLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVG LVMLGLTGATLAGVPIAAALGQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGLLGWSVAVLGGFVFAAHHVVT AAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSAFNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVF AASLAAQRSASRPPAP >Mature_415_residues TTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVARDIGVTIPQAGHVISAYALGV VIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPGYLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVGL VMLGLTGATLAGVPIAAALGQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAIG FGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGLLGWSVAVLGGFVFAAHHVVTA AVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSAFNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVFA ASLAAQRSASRPPAP
Specific function: Unknown
COG id: COG2814
COG function: function code G; Arabinose efflux permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787947, Length=376, Percent_Identity=40.1595744680851, Blast_Score=221, Evalue=6e-59, Organism=Escherichia coli, GI1786595, Length=385, Percent_Identity=32.7272727272727, Blast_Score=202, Evalue=4e-53, Organism=Escherichia coli, GI1787808, Length=361, Percent_Identity=26.0387811634349, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI145693198, Length=329, Percent_Identity=23.7082066869301, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87082231, Length=209, Percent_Identity=26.7942583732057, Blast_Score=72, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41990; Mature: 41859
Theoretical pI: Translated: 11.71; Mature: 11.71
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVA CCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH RDIGVTIPQAGHVISAYALGVVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPG HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC YLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVGLVMLGLTGATLAGVPIAAAL HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH GQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCHHH GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGWSVAVLGGFVFAAHHVVTAAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHH FNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVFAASLAAQRSASRPPAP HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVA CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH RDIGVTIPQAGHVISAYALGVVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPG HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC YLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVGLVMLGLTGATLAGVPIAAAL HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH GQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCHHH GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGL HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGWSVAVLGGFVFAAHHVVTAAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHH FNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVFAASLAAQRSASRPPAP HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]