Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ydhP [H]

Identifier: 120612143

GI number: 120612143

Start: 3859610

End: 3860860

Strand: Reverse

Name: ydhP [H]

Synonym: Aave_3492

Alternate gene names: 120612143

Gene position: 3860860-3859610 (Counterclockwise)

Preceding gene: 120612145

Following gene: 120612141

Centisome position: 72.13

GC content: 74.02

Gene sequence:

>1251_bases
ATGACCACGCCTTCCCTGCCCCGCGATGCCGCCGAAGCCCCGGCGTCCGCCTCTTCCACGGCCACTCCACGTCCGCGGGA
CGACCGCACCCTGCTGCGCGCCGTGCTCGCGCTGGGCCTGGGCGGCTTTTCCATCGGCACGGGCGAATTCGTCATCATGG
GCCTGCTGCCCGAGGTGGCGCGGGATATCGGCGTGACCATCCCGCAGGCCGGGCATGTCATCAGCGCCTATGCGCTGGGC
GTGGTCATCGGCGCGCCCGTGCTGGCCGTGCTCGCGGCGCGCTGGGGCCGGCGCGCACTGCTCATCGCGCTGATGGCCGT
CTATGCGCTGGGCAATTTCGCCTCCGCGATGGCGCCGGGCTACCTGTCGCTGAACCTGCTGCGCTTCGTCACCGGCCTGC
CGCACGGCACCTATTTCGGAGTGGCCGCGCTGGTGGCCGCGTCGCTCGCACCGCCGGGCCGGCGCGCGAGCGCGGTGGGC
CTGGTGATGCTGGGCCTGACGGGGGCCACGCTCGCGGGCGTGCCCATCGCGGCGGCGCTGGGCCAGCATTTCGGCTGGCG
CGCGGCCTTCGTGTTCGTCGGGGCGATCGCGGTGCTGGCGATGGCGATGGTGCGCCGGGGCGTGCCCTACATGCCGCCCG
ACGCGGCCGCGAGCCCCTGGCGGGAGCTCGGGGCGCTGCGGCGCAAGCAGGTCTGGCTCACGCTCGGCATCGGGGCCATC
GGCTTCGGCGGCATGTTCTCGGTCTTCAGCTACATCAAGCCCACGCTCACCGAAGTGGCGGGCTTGCCCGTCGGCGGCGT
GCCTTTCGTGCTGGCGCTCTTCGGCGCGGGCATGGTGGCGGGCAACCTCGTGGGCGCCCGGCTGGCGGATCGTGCCCTGA
TGCGCACCATCGGCGGCCTGCTGGGCTGGTCGGTGGCGGTACTGGGCGGCTTCGTCTTCGCCGCGCACCACGTGGTCACG
GCGGCGGTGGCGACCTTTCTCCTCGGGACCATCGTGGCCATCGGACCGGCCCTGCAGATCCGGCTCATGGACGTGGCCGG
CGACGCGCAGACCCTGGCCGCCGCGCTCAACCATTCGGCCTTCAACTGCGCGAACGCGCTCGGCGCCTGGCTGGGCGGCG
TGGCCATCGCGGCCGGCCTGGGCTGGACGTCCACCGGCTGGGTGGGCGTGCTGCTCGCCATCGGCGGGCTGGCCGTGTTC
GCCGCATCGCTGGCCGCGCAGCGCAGCGCCTCCCGGCCGCCCGCGCCCTGA

Upstream 100 bases:

>100_bases
CAGGGCGTGATATGTTCCACCGACCCTGGGGTTAACCCTGAATACTCCCCTGCGCGCCCGGCCGTCCTCCCTGGCCGGCG
CGCCCCCACGCCGCCTTTCC

Downstream 100 bases:

>100_bases
CTCAGGCGGCCGCGCCGGCGCGGCTGCGCTGCCAGTGGCCCACGCCGTTCGTCACCAGCACGCAGCAGACCAGCCAGGTG
CCTCCGGTGACCCAGCCCGC

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MTTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVARDIGVTIPQAGHVISAYALG
VVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPGYLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVG
LVMLGLTGATLAGVPIAAALGQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI
GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGLLGWSVAVLGGFVFAAHHVVT
AAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSAFNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVF
AASLAAQRSASRPPAP

Sequences:

>Translated_416_residues
MTTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVARDIGVTIPQAGHVISAYALG
VVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPGYLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVG
LVMLGLTGATLAGVPIAAALGQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI
GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGLLGWSVAVLGGFVFAAHHVVT
AAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSAFNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVF
AASLAAQRSASRPPAP
>Mature_415_residues
TTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVARDIGVTIPQAGHVISAYALGV
VIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPGYLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVGL
VMLGLTGATLAGVPIAAALGQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAIG
FGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGLLGWSVAVLGGFVFAAHHVVTA
AVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSAFNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVFA
ASLAAQRSASRPPAP

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=376, Percent_Identity=40.1595744680851, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1786595, Length=385, Percent_Identity=32.7272727272727, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI1787808, Length=361, Percent_Identity=26.0387811634349, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693198, Length=329, Percent_Identity=23.7082066869301, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082231, Length=209, Percent_Identity=26.7942583732057, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41990; Mature: 41859

Theoretical pI: Translated: 11.71; Mature: 11.71

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTPSLPRDAAEAPASASSTATPRPRDDRTLLRAVLALGLGGFSIGTGEFVIMGLLPEVA
CCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
RDIGVTIPQAGHVISAYALGVVIGAPVLAVLAARWGRRALLIALMAVYALGNFASAMAPG
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
YLSLNLLRFVTGLPHGTYFGVAALVAASLAPPGRRASAVGLVMLGLTGATLAGVPIAAAL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
GQHFGWRAAFVFVGAIAVLAMAMVRRGVPYMPPDAAASPWRELGALRRKQVWLTLGIGAI
HHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEECCHHH
GFGGMFSVFSYIKPTLTEVAGLPVGGVPFVLALFGAGMVAGNLVGARLADRALMRTIGGL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGWSVAVLGGFVFAAHHVVTAAVATFLLGTIVAIGPALQIRLMDVAGDAQTLAAALNHSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHH
FNCANALGAWLGGVAIAAGLGWTSTGWVGVLLAIGGLAVFAASLAAQRSASRPPAP
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]