Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612144
Identifier: 120612144
GI number: 120612144
Start: 3861080
End: 3861793
Strand: Direct
Name: 120612144
Synonym: Aave_3493
Alternate gene names: NA
Gene position: 3861080-3861793 (Clockwise)
Preceding gene: 120612142
Following gene: 120612152
Centisome position: 72.13
GC content: 72.83
Gene sequence:
>714_bases ATGAACGACGCCTTCCCCGACGTACGCCTGCTGGTCTTCGACATCTTCGGCACCGTGGTGGACTGGCACGGCAGCATCGT GCGCGAAATGCAGGCGCTGCACCCCCAGGTGGACGCCGACGCCTTCGCCCTCGCCTGGCGCGAGGGCTACCAGCCCGCCA TGCAGCGGGTGCGCAGCGGGGAGCTCGGCTGGACGCGCATCGACGAGTTGCACCGGACCATTCTCGACGGCCTGCTGCCC CGCTTCGGCCTGGCGCACCTGTCCGAGCCGGAGCGCCGGCACCTGAACCGCGCGTGGCACCGGCTCGCGGCCTGGCCCGA CAGCGTGGCCGGGCTGCAGCGGCTCAGGCGCCGCCGCACCATCGCCACGCTCTCCAACGGCAACATCGGCCTGCTCGCCA ACATGGCCAAGGGGGCCGGCCTGCCCTGGGACTGCATCCTGAGCGCCGAGGTGTTCCGGGCCTACAAACCCGATCCGGCG GTGTACCTGGGCGCCGCCCGCGTCTTCGACCTGGAGCCCGCGCAGGTGATGATGGTGGCCGCGCACCACGAGGACCTGGA GGCCGCGCGGGCCTGCGGCCTGCGGACGGCGTATGTGGAAAGGCCGCACGAATTCGGCGCGGCCCGCGCGAAGGACGTCT CGCCCCGGCCGGGCAACGACCTGCACTGCACGGACCTGGGCGCGCTCGCGGACATGCTCGCGGGCCCGGGCTGA
Upstream 100 bases:
>100_bases GGTTTTGCGACCATTGCCGTATGCTGGACGGCACGCGGCATCCGCCACACCGGCAGGGCCGCGCCCTCCCCATCCCCCTC TTCTTCCCCGGAAGCTGCCC
Downstream 100 bases:
>100_bases AACGCCCGCGCCGGCCGCTTCAGCGCCAGCTTCAGGCAGGCAGGGCCGCGCGCAGGCCATGGCCGTGCGGCGAGCACAGC CAGCCGAGCGCCGCGGCATG
Product: haloacid dehalogenase
Products: NA
Alternate protein names: 2-haloalkanoic acid dehalogenase I; DEHCI; Halocarboxylic acid halidohydrolase I; L-2-haloacid dehalogenase I [H]
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MNDAFPDVRLLVFDIFGTVVDWHGSIVREMQALHPQVDADAFALAWREGYQPAMQRVRSGELGWTRIDELHRTILDGLLP RFGLAHLSEPERRHLNRAWHRLAAWPDSVAGLQRLRRRRTIATLSNGNIGLLANMAKGAGLPWDCILSAEVFRAYKPDPA VYLGAARVFDLEPAQVMMVAAHHEDLEAARACGLRTAYVERPHEFGAARAKDVSPRPGNDLHCTDLGALADMLAGPG
Sequences:
>Translated_237_residues MNDAFPDVRLLVFDIFGTVVDWHGSIVREMQALHPQVDADAFALAWREGYQPAMQRVRSGELGWTRIDELHRTILDGLLP RFGLAHLSEPERRHLNRAWHRLAAWPDSVAGLQRLRRRRTIATLSNGNIGLLANMAKGAGLPWDCILSAEVFRAYKPDPA VYLGAARVFDLEPAQVMMVAAHHEDLEAARACGLRTAYVERPHEFGAARAKDVSPRPGNDLHCTDLGALADMLAGPG >Mature_237_residues MNDAFPDVRLLVFDIFGTVVDWHGSIVREMQALHPQVDADAFALAWREGYQPAMQRVRSGELGWTRIDELHRTILDGLLP RFGLAHLSEPERRHLNRAWHRLAAWPDSVAGLQRLRRRRTIATLSNGNIGLLANMAKGAGLPWDCILSAEVFRAYKPDPA VYLGAARVFDLEPAQVMMVAAHHEDLEAARACGLRTAYVERPHEFGAARAKDVSPRPGNDLHCTDLGALADMLAGPG
Specific function: Catalyzes the hydrolytic dehalogenation of small (S)-2- haloalkanoic acids to yield the corresponding (R)-2- hydroxyalkanoic acids. Acts on acids of short chain lengths, C(2) to C(4), with inversion of configuration at C-2 [H]
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. S-2- haloalkanoic acid dehalogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006388 - InterPro: IPR006328 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.8.1.2 [H]
Molecular weight: Translated: 26282; Mature: 26282
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDAFPDVRLLVFDIFGTVVDWHGSIVREMQALHPQVDADAFALAWREGYQPAMQRVRSG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCC ELGWTRIDELHRTILDGLLPRFGLAHLSEPERRHLNRAWHRLAAWPDSVAGLQRLRRRRT CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IATLSNGNIGLLANMAKGAGLPWDCILSAEVFRAYKPDPAVYLGAARVFDLEPAQVMMVA HHEECCCCEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCHHEECCCCHHHEEHH AHHEDLEAARACGLRTAYVERPHEFGAARAKDVSPRPGNDLHCTDLGALADMLAGPG HHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MNDAFPDVRLLVFDIFGTVVDWHGSIVREMQALHPQVDADAFALAWREGYQPAMQRVRSG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHCC ELGWTRIDELHRTILDGLLPRFGLAHLSEPERRHLNRAWHRLAAWPDSVAGLQRLRRRRT CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IATLSNGNIGLLANMAKGAGLPWDCILSAEVFRAYKPDPAVYLGAARVFDLEPAQVMMVA HHEECCCCEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCHHEECCCCHHHEEHH AHHEDLEAARACGLRTAYVERPHEFGAARAKDVSPRPGNDLHCTDLGALADMLAGPG HHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1995594 [H]