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The map label for this gene is rhsB [H]

Identifier: 120612130

GI number: 120612130

Start: 3838572

End: 3840233

Strand: Reverse

Name: rhsB [H]

Synonym: Aave_3478

Alternate gene names: 120612130

Gene position: 3840233-3838572 (Counterclockwise)

Preceding gene: 120612131

Following gene: 120612129

Centisome position: 71.74

GC content: 66.55

Gene sequence:

>1662_bases
ATGGGCCGCATGCTGCAGGCCGGCAATGGCGATGCCCGCGTACACTTCACCTACGACCCGCTCTCGCGCCTGACCGAAGA
GGTGCAGGAGCATCTGGCGCCGGAAGGGGCGGGCACCCTGGGCCGCTATGCCTGGCGCCATGCCTACGACGCGCTGGGCA
ACCGCACGGACAGCCGCATGCCCGGCGGCCGGCACGTGCAATGGCTCTACTACGGCTCGGGCCACCTGCACCAGATCCGG
GTGGACGGGCACGTGCTCTCGGACATCGAGCGCGACGCGCTGCACCAGGAGATCGAGCGCACGCAGGGTGCGCTGGAGAG
CCGCTACGGCTGGGATCCGATGGGCCGGCTGGTGGCGCACAAGGTGGGCCGGCGGCAGGCGCTGCAGGGCCAGCCGGGCA
TGCCGTCGCCACAGGCCCTGCGGGACCGGGACCAGGGCCTGCCCGCATTGCCGCAGCTTCCTTCGGGCGACCGCATCGCG
CGGCAGTACCGCTACGACCCGACGGGCCACCTGATCGCCACGCGCGACGGCCTGCGGGGCGAGAGCCACTACCGCTACGA
CCCGCTGGGCCGCATCCTGGCGGCGCAGCGCGGGGAAGGCAAACAACAGCCCACCGAGCGCGAGACCTTCGCCTTCGACC
CGGCCGGCAACCTGCTGAACCCGAACCGGGGCGGCGCGCAATCCAGCGGCGGCGTGGGCCAGCGGGACGTGGTGCCATAC
AACCGGCTGGCGGTGTACCAGGACCTGCGCTTCACCTACGACCTGCACGGCAACACCATCGAGCGCCGCATCGGCTGGCA
CACGGTGCAGCACTACCGCTACAGCCCGGAGCACCAGATCGTGGAGGCGCGCGTGGTGCGGTATCGCGAACGGCCCGCCG
AAGGGCAAGCGGAGCCTGCGGCCACGGAGCAGGTCACCCACTACCGCTACGACGCCCTGGGCCGGCGCATCGACAAGCGG
GACGCGTTCGGGCGCACGGTGTTTCTCTACGACGGGGACCTGCTGGCGGGCGAACTGCGCGGCAGCAGGCTGTCGGAATA
CCTCTACGAGCCGGACAGCTTCGTGCCGCTGGCGAAGCTGGAATCGGAGTGGAAGGGTGAGGCCGCAGACAAAGAAAGGG
ATGAGGACAAGGAGTCGGCACGACCCAAGGACTTCGCTGCCTACTACTACCAATGCGACCAGATCGGCGCGCCGCAGGAG
CTGACGGACGAGCAGGGCCGCATCGTGTGGGCGGCGAGCTACCAGGTGTGGGGTCAGACGCGGGCGCTGCAAGTCATGCG
CACGGGCACGGACGACGCGGCGGTGTTCACCCAGGCGGAGCGGCCTTTGGCGCTGGCGGCGAAGGGGGATGTGCAGGCGC
TGAGCTTCGTGGAGCAACCGCTGCGGTTCCAGGGGCAGTACTTCGATGGCGAGACGGGACTGCACTACAACCGGTTTCGG
TACTACGATCCGGTGACGGGGCGGTTCGTGCATCAGGATCCGATTGGGTTGTTGGGTGGTACCAATCTTTTTACCTATGC
TCCAAATGCATTTAATTGGGTGGATGAGTATGGATTGCAAAGAAAGAACAAAAGTTGCTCAATTTGTGGTTCGCAAAGAT
GTAAGACGCTGGCAGATTGGCTGAAGGATTATCCGGAAATATTGAAAGAGGCCAGAGAATAA

Upstream 100 bases:

>100_bases
ATTTCTCGTAGTCGTAGCCCTTGTCTGCGTGGAGCTTGTCGGGTCGTCTCCTGGGCCTGCCCTGCAGGCCTCCTACAGGT
CGCACCGCGTCAACGACACT

Downstream 100 bases:

>100_bases
TTCAAAAAATCTCCTGATTGGCAAGGCATTGATCCAGATAAAACCCATGTTTTCTATAGAACTAAAGACGAGGTTGATAA
AATAAGAGCTAAACCTGGAG

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MGRMLQAGNGDARVHFTYDPLSRLTEEVQEHLAPEGAGTLGRYAWRHAYDALGNRTDSRMPGGRHVQWLYYGSGHLHQIR
VDGHVLSDIERDALHQEIERTQGALESRYGWDPMGRLVAHKVGRRQALQGQPGMPSPQALRDRDQGLPALPQLPSGDRIA
RQYRYDPTGHLIATRDGLRGESHYRYDPLGRILAAQRGEGKQQPTERETFAFDPAGNLLNPNRGGAQSSGGVGQRDVVPY
NRLAVYQDLRFTYDLHGNTIERRIGWHTVQHYRYSPEHQIVEARVVRYRERPAEGQAEPAATEQVTHYRYDALGRRIDKR
DAFGRTVFLYDGDLLAGELRGSRLSEYLYEPDSFVPLAKLESEWKGEAADKERDEDKESARPKDFAAYYYQCDQIGAPQE
LTDEQGRIVWAASYQVWGQTRALQVMRTGTDDAAVFTQAERPLALAAKGDVQALSFVEQPLRFQGQYFDGETGLHYNRFR
YYDPVTGRFVHQDPIGLLGGTNLFTYAPNAFNWVDEYGLQRKNKSCSICGSQRCKTLADWLKDYPEILKEARE

Sequences:

>Translated_553_residues
MGRMLQAGNGDARVHFTYDPLSRLTEEVQEHLAPEGAGTLGRYAWRHAYDALGNRTDSRMPGGRHVQWLYYGSGHLHQIR
VDGHVLSDIERDALHQEIERTQGALESRYGWDPMGRLVAHKVGRRQALQGQPGMPSPQALRDRDQGLPALPQLPSGDRIA
RQYRYDPTGHLIATRDGLRGESHYRYDPLGRILAAQRGEGKQQPTERETFAFDPAGNLLNPNRGGAQSSGGVGQRDVVPY
NRLAVYQDLRFTYDLHGNTIERRIGWHTVQHYRYSPEHQIVEARVVRYRERPAEGQAEPAATEQVTHYRYDALGRRIDKR
DAFGRTVFLYDGDLLAGELRGSRLSEYLYEPDSFVPLAKLESEWKGEAADKERDEDKESARPKDFAAYYYQCDQIGAPQE
LTDEQGRIVWAASYQVWGQTRALQVMRTGTDDAAVFTQAERPLALAAKGDVQALSFVEQPLRFQGQYFDGETGLHYNRFR
YYDPVTGRFVHQDPIGLLGGTNLFTYAPNAFNWVDEYGLQRKNKSCSICGSQRCKTLADWLKDYPEILKEARE
>Mature_552_residues
GRMLQAGNGDARVHFTYDPLSRLTEEVQEHLAPEGAGTLGRYAWRHAYDALGNRTDSRMPGGRHVQWLYYGSGHLHQIRV
DGHVLSDIERDALHQEIERTQGALESRYGWDPMGRLVAHKVGRRQALQGQPGMPSPQALRDRDQGLPALPQLPSGDRIAR
QYRYDPTGHLIATRDGLRGESHYRYDPLGRILAAQRGEGKQQPTERETFAFDPAGNLLNPNRGGAQSSGGVGQRDVVPYN
RLAVYQDLRFTYDLHGNTIERRIGWHTVQHYRYSPEHQIVEARVVRYRERPAEGQAEPAATEQVTHYRYDALGRRIDKRD
AFGRTVFLYDGDLLAGELRGSRLSEYLYEPDSFVPLAKLESEWKGEAADKERDEDKESARPKDFAAYYYQCDQIGAPQEL
TDEQGRIVWAASYQVWGQTRALQVMRTGTDDAAVFTQAERPLALAAKGDVQALSFVEQPLRFQGQYFDGETGLHYNRFRY
YDPVTGRFVHQDPIGLLGGTNLFTYAPNAFNWVDEYGLQRKNKSCSICGSQRCKTLADWLKDYPEILKEARE

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI1786706, Length=585, Percent_Identity=28.034188034188, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI48994942, Length=600, Percent_Identity=25.8333333333333, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1790020, Length=580, Percent_Identity=25.8620689655172, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1786917, Length=580, Percent_Identity=25.1724137931034, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 62924; Mature: 62792

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRMLQAGNGDARVHFTYDPLSRLTEEVQEHLAPEGAGTLGRYAWRHAYDALGNRTDSRM
CCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGGRHVQWLYYGSGHLHQIRVDGHVLSDIERDALHQEIERTQGALESRYGWDPMGRLVAH
CCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KVGRRQALQGQPGMPSPQALRDRDQGLPALPQLPSGDRIARQYRYDPTGHLIATRDGLRG
HHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCC
ESHYRYDPLGRILAAQRGEGKQQPTERETFAFDPAGNLLNPNRGGAQSSGGVGQRDVVPY
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRLAVYQDLRFTYDLHGNTIERRIGWHTVQHYRYSPEHQIVEARVVRYRERPAEGQAEPA
HHHHHEECCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
ATEQVTHYRYDALGRRIDKRDAFGRTVFLYDGDLLAGELRGSRLSEYLYEPDSFVPLAKL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEHHHCHHHHHHHHCCCCCCCCHHHH
ESEWKGEAADKERDEDKESARPKDFAAYYYQCDQIGAPQELTDEQGRIVWAASYQVWGQT
HHHHCCCCCCCCCCCHHHHCCCCHHHHHHEECCCCCCCHHHCCCCCCEEEEEEEEECCCH
RALQVMRTGTDDAAVFTQAERPLALAAKGDVQALSFVEQPLRFQGQYFDGETGLHYNRFR
HEEEEEECCCCCHHEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCEECCCCCCEECCEE
YYDPVTGRFVHQDPIGLLGGTNLFTYAPNAFNWVDEYGLQRKNKSCSICGSQRCKTLADW
EECCCCCCEEECCCCCEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LKDYPEILKEARE
HHHHHHHHHHHCC
>Mature Secondary Structure 
GRMLQAGNGDARVHFTYDPLSRLTEEVQEHLAPEGAGTLGRYAWRHAYDALGNRTDSRM
CCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PGGRHVQWLYYGSGHLHQIRVDGHVLSDIERDALHQEIERTQGALESRYGWDPMGRLVAH
CCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
KVGRRQALQGQPGMPSPQALRDRDQGLPALPQLPSGDRIARQYRYDPTGHLIATRDGLRG
HHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCC
ESHYRYDPLGRILAAQRGEGKQQPTERETFAFDPAGNLLNPNRGGAQSSGGVGQRDVVPY
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRLAVYQDLRFTYDLHGNTIERRIGWHTVQHYRYSPEHQIVEARVVRYRERPAEGQAEPA
HHHHHEECCEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
ATEQVTHYRYDALGRRIDKRDAFGRTVFLYDGDLLAGELRGSRLSEYLYEPDSFVPLAKL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEHHHCHHHHHHHHCCCCCCCCHHHH
ESEWKGEAADKERDEDKESARPKDFAAYYYQCDQIGAPQELTDEQGRIVWAASYQVWGQT
HHHHCCCCCCCCCCCHHHHCCCCHHHHHHEECCCCCCCHHHCCCCCCEEEEEEEEECCCH
RALQVMRTGTDDAAVFTQAERPLALAAKGDVQALSFVEQPLRFQGQYFDGETGLHYNRFR
HEEEEEECCCCCHHEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCEECCCCCCEECCEE
YYDPVTGRFVHQDPIGLLGGTNLFTYAPNAFNWVDEYGLQRKNKSCSICGSQRCKTLADW
EECCCCCCEEECCCCCEECCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LKDYPEILKEARE
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8041620; 9278503; 2644231; 2403547; 7934896 [H]