Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is 120612029
Identifier: 120612029
GI number: 120612029
Start: 3729257
End: 3729640
Strand: Direct
Name: 120612029
Synonym: Aave_3375
Alternate gene names: NA
Gene position: 3729257-3729640 (Clockwise)
Preceding gene: 120612028
Following gene: 120612030
Centisome position: 69.67
GC content: 71.09
Gene sequence:
>384_bases ATGACCCGAATCTCCACTCTCTTGGCCGCCTCCGCCCTGGCCCTGGCGCTCGCCGGCTGCGCCTCCATGTCGCCCATGCC CGGCGGCGTCGCCGAGAAGAACGGCGCCCTCGTGGGCCCGAACGGCATGACTCTCTACACGTTCGACCGCGATCCGGCCG GCGGCGGCAAGTCGGTCTGCAACGGCCCCTGCGCGAAGAACTGGCCTCCGCTGCTGGCCGGCAGCGAGACGCCCACGGGC GAATTCAGCGTGGTGCAGCGCGACGACGGCGCCCGCCAGCTGGCCTACAAGGGCAAGCCGCTCTACTACTGGGTCAAGGA CGTCCAGCCCGGCGACCGTACCGGCGACGGCGTGAACCAGGTCTGGCGCACCGCCAAGCCCTGA
Upstream 100 bases:
>100_bases ATTTTTTCGGGCGGCGCGGAATAAATCCGCCGCGCCCGGTGTTCATTCCATCACGGGCCCGGCATGTCGCCGCCGCCCGT GCCTACAGGAGCAATCACCG
Downstream 100 bases:
>100_bases CCCGCCCCCGAAGCCGCCCGCATGGACGACATCGCGCCGCACCTGCCGGGCCTGCGGCGCTACGCGCGGGCGCTGACGGG CAATGCCTGGGCGGCGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Secreted Repeat-Containing Protein; Blue Copper Domain Protein; Signal Peptide Protein; Secreted Repeat Protein; Exported Lipoprotein; Secreted Protein; Exported Protein
Number of amino acids: Translated: 127; Mature: 126
Protein sequence:
>127_residues MTRISTLLAASALALALAGCASMSPMPGGVAEKNGALVGPNGMTLYTFDRDPAGGGKSVCNGPCAKNWPPLLAGSETPTG EFSVVQRDDGARQLAYKGKPLYYWVKDVQPGDRTGDGVNQVWRTAKP
Sequences:
>Translated_127_residues MTRISTLLAASALALALAGCASMSPMPGGVAEKNGALVGPNGMTLYTFDRDPAGGGKSVCNGPCAKNWPPLLAGSETPTG EFSVVQRDDGARQLAYKGKPLYYWVKDVQPGDRTGDGVNQVWRTAKP >Mature_126_residues TRISTLLAASALALALAGCASMSPMPGGVAEKNGALVGPNGMTLYTFDRDPAGGGKSVCNGPCAKNWPPLLAGSETPTGE FSVVQRDDGARQLAYKGKPLYYWVKDVQPGDRTGDGVNQVWRTAKP
Specific function: Unknown
COG id: COG4315
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13241; Mature: 13110
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRISTLLAASALALALAGCASMSPMPGGVAEKNGALVGPNGMTLYTFDRDPAGGGKSVC CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCC NGPCAKNWPPLLAGSETPTGEFSVVQRDDGARQLAYKGKPLYYWVKDVQPGDRTGDGVNQ CCCCCCCCCCCEECCCCCCCCEEEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHH VWRTAKP HHHCCCC >Mature Secondary Structure TRISTLLAASALALALAGCASMSPMPGGVAEKNGALVGPNGMTLYTFDRDPAGGGKSVC CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCC NGPCAKNWPPLLAGSETPTGEFSVVQRDDGARQLAYKGKPLYYWVKDVQPGDRTGDGVNQ CCCCCCCCCCCEECCCCCCCCEEEEECCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHH VWRTAKP HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA