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The map label for this gene is rpoE [H]

Identifier: 120612030

GI number: 120612030

Start: 3729662

End: 3730201

Strand: Direct

Name: rpoE [H]

Synonym: Aave_3376

Alternate gene names: 120612030

Gene position: 3729662-3730201 (Clockwise)

Preceding gene: 120612029

Following gene: 120612031

Centisome position: 69.68

GC content: 72.41

Gene sequence:

>540_bases
ATGGACGACATCGCGCCGCACCTGCCGGGCCTGCGGCGCTACGCGCGGGCGCTGACGGGCAATGCCTGGGCGGCGGACGA
TCTGGTACAGGACACGCTCGAACGCGCCTGCCGGAAATGGCTGCTGTGGCGCCCGGGCAGCGACCTGCGCGCATGGCTGT
TCACGCTCATGCATCGGGTGTACCTGAACCAGTTGCGCGCGATGCCGGCGCAGCCCCCGCTGGATCTGGAAACGGTACAG
GACCACCTGCAGGCGCCGCCCGCGCGCACGGACGAGGCGCTGGACCTGGACCGCTGCCTGCAGCGCCTGCCTGCCGACCA
GCGCGCGGTGCTGCTGCTGGTGACGCTCGAAGACATGGATTACGCCGCCGCCGCGAAGGTGCTGGACGTGCCGGTGGGCA
CGGTGATGTCACGGCTTTCGCGCGCCCGGCAGCGGCTGCGCGAACTGATGGAACCGCAGGCCCGCGCACCCGGCGCGGCG
CCGGAGACACGGCAGCCGCCTTCCCCGCCTGGAGCGCCGCGGCTGCGGCGGCTGAAATGA

Upstream 100 bases:

>100_bases
CTACTGGGTCAAGGACGTCCAGCCCGGCGACCGTACCGGCGACGGCGTGAACCAGGTCTGGCGCACCGCCAAGCCCTGAC
CCGCCCCCGAAGCCGCCCGC

Downstream 100 bases:

>100_bases
CGATGGACCGCAGGCCATGACCGACCCGCGCACCCCCTGCCCCGACGGCGCTCTGCATCGCGCCCCATCCGGTGCCCCGG
ATACCGGTCTGGATGACGAC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MDDIAPHLPGLRRYARALTGNAWAADDLVQDTLERACRKWLLWRPGSDLRAWLFTLMHRVYLNQLRAMPAQPPLDLETVQ
DHLQAPPARTDEALDLDRCLQRLPADQRAVLLLVTLEDMDYAAAAKVLDVPVGTVMSRLSRARQRLRELMEPQARAPGAA
PETRQPPSPPGAPRLRRLK

Sequences:

>Translated_179_residues
MDDIAPHLPGLRRYARALTGNAWAADDLVQDTLERACRKWLLWRPGSDLRAWLFTLMHRVYLNQLRAMPAQPPLDLETVQ
DHLQAPPARTDEALDLDRCLQRLPADQRAVLLLVTLEDMDYAAAAKVLDVPVGTVMSRLSRARQRLRELMEPQARAPGAA
PETRQPPSPPGAPRLRRLK
>Mature_179_residues
MDDIAPHLPGLRRYARALTGNAWAADDLVQDTLERACRKWLLWRPGSDLRAWLFTLMHRVYLNQLRAMPAQPPLDLETVQ
DHLQAPPARTDEALDLDRCLQRLPADQRAVLLLVTLEDMDYAAAAKVLDVPVGTVMSRLSRARQRLRELMEPQARAPGAA
PETRQPPSPPGAPRLRRLK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20233; Mature: 20233

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIAPHLPGLRRYARALTGNAWAADDLVQDTLERACRKWLLWRPGSDLRAWLFTLMHRV
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YLNQLRAMPAQPPLDLETVQDHLQAPPARTDEALDLDRCLQRLPADQRAVLLLVTLEDMD
HHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHCCHHHHHHHCCCCCCEEEEEEEECCCC
YAAAAKVLDVPVGTVMSRLSRARQRLRELMEPQARAPGAAPETRQPPSPPGAPRLRRLK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDIAPHLPGLRRYARALTGNAWAADDLVQDTLERACRKWLLWRPGSDLRAWLFTLMHRV
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YLNQLRAMPAQPPLDLETVQDHLQAPPARTDEALDLDRCLQRLPADQRAVLLLVTLEDMD
HHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHCCHHHHHHHCCCCCCEEEEEEEECCCC
YAAAAKVLDVPVGTVMSRLSRARQRLRELMEPQARAPGAAPETRQPPSPPGAPRLRRLK
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]