Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120612014
Identifier: 120612014
GI number: 120612014
Start: 3716907
End: 3717899
Strand: Reverse
Name: 120612014
Synonym: Aave_3360
Alternate gene names: NA
Gene position: 3717899-3716907 (Counterclockwise)
Preceding gene: 120612015
Following gene: 120612013
Centisome position: 69.46
GC content: 62.94
Gene sequence:
>993_bases ATGACCAGAATGTGGATGGTGCGCGGTGAAGGCGGCAGCCTGTACGACGCTTTTCGGGAACGCGGCGTAGCTGCCGTGGG CTGGAACCAGTTGGCGGCACATGCCAAGCCCGGTGTCGGGCGCAAGCAGTTGATCGCCCTGTACCAGTCCGCCGAGCCCC TGGCAAAACAAGGCACGGTGGTTTCGGGCGCATCCCAGGTCTGGCGCTTCGTCAACGACATTGAGGAGGGTGACTGGGTC ATCACCTATTCGCCCGCCAATCGCCTGTACTCAATCGGCAATGTCACTGGACCAGCCGAGTACCACCCTGAGTGGGCCGA GCAAGGCATGCCCCTGGTGCGCAAGGTGCAGTGGCAAGCGCAGGAACTGCCGCGCGATAACTTGGGCACGAGCAGCAAAA ACAGCCTGGGTTCGACCCTGACCCTCTTTGAGGTACCGCCCAGCGCGGCAGCCGAAGTGCTGGCCGCACTGAAGGGTAAA CCGGCACCAACAGTGGAAGAGGAGGCCGAGGAAGTCATCGCCGATCCGCTGGCCGACATCGAGTCTCAGGCGCTGGAACG CATCAAGGACCGGGTCAACGAACTGGACTGGGACGACATGCAGCAATTGGTCGCCGGCATCCTGCGCGCCATGGGCTACA AGACCCAGGTCTCGCCGCCCGGCTCCGACCGTGGGAAGGACATCGTGGCCTCCCCGGATGGCTTCGGCTTCGAGCACCCG CGCATCGTCGTAGAGGTCAAGCATCGCAAGGGACAGATGGGTAGCCAGGAGATTCGTAGCTTCCTCGGCGGCCGCCACAA GGATGATCGCGGGCTGTATGTCAGCACGGGCGGTTTCAGTAAGGACGCTCTGTACGAAGCTGACCGCGCCTCCATTCCGT TGGCGATGTGGACGCTGGACCACGTAGTGCGGGCGCTGATTGAGCACTACGACGGGACCGACGCTGAAACCAAACGGATC GTGCCGTTGAAGCGGCTGTACTGGCCGGCCTAA
Upstream 100 bases:
>100_bases TCTCGTTGCAGCGCAATGTCAGAGATGTCCAACCGACTGCACTGGCGACTGAATTCATGGTCGTGTTGGATTGATGGGGG TGAATATTAGAGGGAACACG
Downstream 100 bases:
>100_bases CCAAAAAAGAAGATGGTTCAATAACAATGAGCGTTAACTTTCAGCAACTCGCCAATTTCATCTGGTCGGTAGCCGACCTG CTGCGTGGCCCCTATCGTCC
Product: restriction endonuclease
Products: NA
Alternate protein names: Type II Restriction Endonuclease; Mrr Restriction Endonuclease; Restriction Endonuclease Protein; Restriction Endonuclease Family Protein; 5-Methylcytosine-Specific Restriction MRR; Mrr Restriction System Protein
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MTRMWMVRGEGGSLYDAFRERGVAAVGWNQLAAHAKPGVGRKQLIALYQSAEPLAKQGTVVSGASQVWRFVNDIEEGDWV ITYSPANRLYSIGNVTGPAEYHPEWAEQGMPLVRKVQWQAQELPRDNLGTSSKNSLGSTLTLFEVPPSAAAEVLAALKGK PAPTVEEEAEEVIADPLADIESQALERIKDRVNELDWDDMQQLVAGILRAMGYKTQVSPPGSDRGKDIVASPDGFGFEHP RIVVEVKHRKGQMGSQEIRSFLGGRHKDDRGLYVSTGGFSKDALYEADRASIPLAMWTLDHVVRALIEHYDGTDAETKRI VPLKRLYWPA
Sequences:
>Translated_330_residues MTRMWMVRGEGGSLYDAFRERGVAAVGWNQLAAHAKPGVGRKQLIALYQSAEPLAKQGTVVSGASQVWRFVNDIEEGDWV ITYSPANRLYSIGNVTGPAEYHPEWAEQGMPLVRKVQWQAQELPRDNLGTSSKNSLGSTLTLFEVPPSAAAEVLAALKGK PAPTVEEEAEEVIADPLADIESQALERIKDRVNELDWDDMQQLVAGILRAMGYKTQVSPPGSDRGKDIVASPDGFGFEHP RIVVEVKHRKGQMGSQEIRSFLGGRHKDDRGLYVSTGGFSKDALYEADRASIPLAMWTLDHVVRALIEHYDGTDAETKRI VPLKRLYWPA >Mature_329_residues TRMWMVRGEGGSLYDAFRERGVAAVGWNQLAAHAKPGVGRKQLIALYQSAEPLAKQGTVVSGASQVWRFVNDIEEGDWVI TYSPANRLYSIGNVTGPAEYHPEWAEQGMPLVRKVQWQAQELPRDNLGTSSKNSLGSTLTLFEVPPSAAAEVLAALKGKP APTVEEEAEEVIADPLADIESQALERIKDRVNELDWDDMQQLVAGILRAMGYKTQVSPPGSDRGKDIVASPDGFGFEHPR IVVEVKHRKGQMGSQEIRSFLGGRHKDDRGLYVSTGGFSKDALYEADRASIPLAMWTLDHVVRALIEHYDGTDAETKRIV PLKRLYWPA
Specific function: Unknown
COG id: COG4127
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36449; Mature: 36317
Theoretical pI: Translated: 5.69; Mature: 5.69
Prosite motif: PS00287 CYSTATIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRMWMVRGEGGSLYDAFRERGVAAVGWNQLAAHAKPGVGRKQLIALYQSAEPLAKQGTV CCCEEEEECCCCCHHHHHHHCCCEEECHHHHHHHCCCCCCHHHHHHHHHCCCHHHHCCCE VSGASQVWRFVNDIEEGDWVITYSPANRLYSIGNVTGPAEYHPEWAEQGMPLVRKVQWQA ECCHHHHHHHHHHHCCCCEEEEECCHHHEEECCCCCCCHHCCCCHHHCCCHHHHHHHHHH QELPRDNLGTSSKNSLGSTLTLFEVPPSAAAEVLAALKGKPAPTVEEEAEEVIADPLADI HHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH ESQALERIKDRVNELDWDDMQQLVAGILRAMGYKTQVSPPGSDRGKDIVASPDGFGFEHP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCC RIVVEVKHRKGQMGSQEIRSFLGGRHKDDRGLYVSTGGFSKDALYEADRASIPLAMWTLD EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCHHHHHHH HVVRALIEHYDGTDAETKRIVPLKRLYWPA HHHHHHHHHCCCCCCCCHHCCCHHHHCCCC >Mature Secondary Structure TRMWMVRGEGGSLYDAFRERGVAAVGWNQLAAHAKPGVGRKQLIALYQSAEPLAKQGTV CCEEEEECCCCCHHHHHHHCCCEEECHHHHHHHCCCCCCHHHHHHHHHCCCHHHHCCCE VSGASQVWRFVNDIEEGDWVITYSPANRLYSIGNVTGPAEYHPEWAEQGMPLVRKVQWQA ECCHHHHHHHHHHHCCCCEEEEECCHHHEEECCCCCCCHHCCCCHHHCCCHHHHHHHHHH QELPRDNLGTSSKNSLGSTLTLFEVPPSAAAEVLAALKGKPAPTVEEEAEEVIADPLADI HHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH ESQALERIKDRVNELDWDDMQQLVAGILRAMGYKTQVSPPGSDRGKDIVASPDGFGFEHP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCC RIVVEVKHRKGQMGSQEIRSFLGGRHKDDRGLYVSTGGFSKDALYEADRASIPLAMWTLD EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCHHHHHHH HVVRALIEHYDGTDAETKRIVPLKRLYWPA HHHHHHHHHCCCCCCCCHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA