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The map label for this gene is clpS

Identifier: 120611897

GI number: 120611897

Start: 3572614

End: 3572982

Strand: Reverse

Name: clpS

Synonym: Aave_3239

Alternate gene names: 120611897

Gene position: 3572982-3572614 (Counterclockwise)

Preceding gene: 120611898

Following gene: 120611896

Centisome position: 66.75

GC content: 65.04

Gene sequence:

>369_bases
ATGGTCCGCATGGCAACTAAACCACCCTCCATGACCCCGACGCCTCCCACGGGAGCGCCGCCGCGGGACGATGGCGGCTC
GGTCGTGCTCGAGAGGCGCACGCAGAGGACCCAGCCGCCCCAGATGTACCAGGTGGTGATGCTGAACGACGACTACACGC
CCATGGAGTTCGTGATCGTCGTGCTGCAGGAGTTCTTCGGCAAGGACCGCGAAGCGGCCACGCAGATCATGCTCAAGATC
CACCTGGACGGCAAAGGCGTCTGCGGAGTGTATTCGCGCGACGTGGCCGCCACCAAGGTCGAACAGGTGCGCGAAGCCGC
GCACAAGGCGGGCCACCCGCTGCAATGCCTGAGCGAGCCGGTTGAATAA

Upstream 100 bases:

>100_bases
CCCGTGCCGAACGGCATGCGAAACCGTGTCGCAAGACCGGAATTTGCACCCCGGCACTGGGCTTTTTCGCTCTGGGGCAA
ACTGTCCCGGACGCTCTAGA

Downstream 100 bases:

>100_bases
CCGGCCCCGGGTCCCGATCTATCGTTATCCCTTCCCCGCAAGCACAAAGGAGTTCACATGATTGCCCAGGAACTGGAAGT
CAGCTTGCACATGGCCTTTG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MVRMATKPPSMTPTPPTGAPPRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKI
HLDGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEPVE

Sequences:

>Translated_122_residues
MVRMATKPPSMTPTPPTGAPPRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKI
HLDGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEPVE
>Mature_122_residues
MVRMATKPPSMTPTPPTGAPPRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIVVLQEFFGKDREAATQIMLKI
HLDGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEPVE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=96, Percent_Identity=50, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_ACIAC (A1TS63)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_971575.1
- ProteinModelPortal:   A1TS63
- SMR:   A1TS63
- STRING:   A1TS63
- GeneID:   4665790
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_3239
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   QVPRQDI
- PhylomeDB:   A1TS63
- ProtClustDB:   CLSK951597
- BioCyc:   AAVE397945:AAVE_3239-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13521; Mature: 13521

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRMATKPPSMTPTPPTGAPPRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIV
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHH
VLQEFFGKDREAATQIMLKIHLDGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEP
HHHHHHCCCHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
VE
CC
>Mature Secondary Structure
MVRMATKPPSMTPTPPTGAPPRDDGGSVVLERRTQRTQPPQMYQVVMLNDDYTPMEFVIV
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHH
VLQEFFGKDREAATQIMLKIHLDGKGVCGVYSRDVAATKVEQVREAAHKAGHPLQCLSEP
HHHHHHCCCHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC
VE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA