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The map label for this gene is yebC [C]

Identifier: 120611861

GI number: 120611861

Start: 3531608

End: 3532327

Strand: Reverse

Name: yebC [C]

Synonym: Aave_3203

Alternate gene names: 120611861

Gene position: 3532327-3531608 (Counterclockwise)

Preceding gene: 120611863

Following gene: 120611860

Centisome position: 65.99

GC content: 67.36

Gene sequence:

>720_bases
GTGGCAGGACACAGCAAATGGGCCAATATCCAGCACCGCAAGGGGCGGCAGGATGAAAAGCGCGGCAAGATCTGGACCCG
GATCATTCGCGAGATCACCGTGGCCGCCCGGGCCGGTGGGGGCGACGTCTCGGCCAACCCGCGCCTGCGGCTGGCCATCG
ACAAGGCCAAGGCCGCCAACATGCCGGCCGACCGCATCAAGTACAACATCGACAAGGCCACCGGCAACGCCGAAGGCCTG
ACCTACGAGGAAATCCGCTACGAGGGCTACGGCATCGGCGGCGCGGCCATCATCGTGGACACGATGACCGACAACCGCGT
GCGCACCGTGGCCGAAGTGCGCCATGCGTTCAGCAAGTACGGCGGCAACATGGGCACCGAAGGCTCGGTGGCCTTCCAGT
TCAAGCACGTGGGCCAGCTCATCTTCGCCCCCGGCACGAGCGAGGACAAGGTCATGGAAGTGGCCCTGGAGGCCGGCGCC
GAAGACGTGGTGACGGACGAGGACGGCGCCATCGAGGTGCTCACCGCGCCCGGCGACTTCGAGGCCGTGAAGAACGCCCT
GGAGGCCGCGGGCCTGACGCCCGACGCCGCCGACGTGACCATGCGCCCCGACGTCACCATCGACCTGGCCGGCGAGGACG
CCGAGCGCATGCAGAAGCTCCTGGACGTGATCGAGGACCTCGACGACGTGCAGGAGGTTTATCACAACGCCGCGCTCTGA

Upstream 100 bases:

>100_bases
TTCGCAATCAGGATCGGTTCGGCCATGGCTGGGGAGAGTCAAAAGTAAAATCGCGTCCGACCGGTAGATTAATCGATAGA
CACAACAGCAAGGACTCCCT

Downstream 100 bases:

>100_bases
CCGACGAGGCACCCGGACACCCCATGAAAGTTCTTGTCATCGGAGGCGGCGGCCGTGAACACGCAATGGCCTGGAAACTC
TCGCAGTCTCCCAAGGTCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAANMPADRIKYNIDKATGNAEGL
TYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKYGGNMGTEGSVAFQFKHVGQLIFAPGTSEDKVMEVALEAGA
EDVVTDEDGAIEVLTAPGDFEAVKNALEAAGLTPDAADVTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQEVYHNAAL

Sequences:

>Translated_239_residues
MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAANMPADRIKYNIDKATGNAEGL
TYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKYGGNMGTEGSVAFQFKHVGQLIFAPGTSEDKVMEVALEAGA
EDVVTDEDGAIEVLTAPGDFEAVKNALEAAGLTPDAADVTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQEVYHNAAL
>Mature_238_residues
AGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAANMPADRIKYNIDKATGNAEGLT
YEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKYGGNMGTEGSVAFQFKHVGQLIFAPGTSEDKVMEVALEAGAE
DVVTDEDGAIEVLTAPGDFEAVKNALEAAGLTPDAADVTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQEVYHNAAL

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=245, Percent_Identity=26.9387755102041, Blast_Score=104, Evalue=6e-23,
Organism=Escherichia coli, GI1788171, Length=236, Percent_Identity=57.2033898305085, Blast_Score=265, Evalue=2e-72,
Organism=Escherichia coli, GI1788294, Length=236, Percent_Identity=41.5254237288136, Blast_Score=158, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17556100, Length=244, Percent_Identity=25.4098360655738, Blast_Score=81, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6321458, Length=265, Percent_Identity=31.6981132075472, Blast_Score=115, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24583305, Length=244, Percent_Identity=27.4590163934426, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3203_ACIAC (A1TS27)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_971539.1
- ProteinModelPortal:   A1TS27
- SMR:   A1TS27
- STRING:   A1TS27
- GeneID:   4665139
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_3203
- NMPDR:   fig|397945.5.peg.2737
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   A1TS27
- ProtClustDB:   PRK00110
- BioCyc:   AAVE397945:AAVE_3203-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 25841; Mature: 25710

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAAN
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHCC
MPADRIKYNIDKATGNAEGLTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKY
CCHHHHEEEEECCCCCCCCCCHHHEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
GGNMGTEGSVAFQFKHVGQLIFAPGTSEDKVMEVALEAGAEDVVTDEDGAIEVLTAPGDF
CCCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEECCCCH
EAVKNALEAAGLTPDAADVTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQEVYHNAAL
HHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGHSKWANIQHRKGRQDEKRGKIWTRIIREITVAARAGGGDVSANPRLRLAIDKAKAAN
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHCC
MPADRIKYNIDKATGNAEGLTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVAEVRHAFSKY
CCHHHHEEEEECCCCCCCCCCHHHEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
GGNMGTEGSVAFQFKHVGQLIFAPGTSEDKVMEVALEAGAEDVVTDEDGAIEVLTAPGDF
CCCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCEEEEECCCCH
EAVKNALEAAGLTPDAADVTMRPDVTIDLAGEDAERMQKLLDVIEDLDDVQEVYHNAAL
HHHHHHHHHCCCCCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA