Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is soxR [C]
Identifier: 120611247
GI number: 120611247
Start: 2827104
End: 2827535
Strand: Direct
Name: soxR [C]
Synonym: Aave_2579
Alternate gene names: 120611247
Gene position: 2827104-2827535 (Clockwise)
Preceding gene: 120611245
Following gene: 120611258
Centisome position: 52.82
GC content: 67.82
Gene sequence:
>432_bases ATGGAAATTGCCGAGGTGGCCAGGCGCTCGGGGGTGCCTGCGTCGGCACTGCGTTACTACGAAGGGAAGGGGCTGATCGC GTCCGTCGGCCGGCAGGGCATCCGGCGTGTGTTCGGCCCCGATGTGCTGGAGCGGCTCGCGCTGATCGCGCTGGGGCGCA GCGCAGGTTTCTCGCTGGACGAGATTTCACGCATGTTTGCGCCCGACGGCAAGCTGGCCATCGATCGCCGGATGCTGCTG GCCAAGGCGGACGACATCGACCGCACGATCCTGAAATTGCGTGCGATGAGCGAAGGGCTGCGGCATGCGGCCGTATGCCC GGCTCCTTCGCACATGGCATGCCCGTCGTTTCAGCGGCTGCTGCAGAAAGCTTCGGCCCAGGCCGCGCCCCGTAGCGGGC GGCGCGGGGCGGCGAGTCCCATGGACTCTTGA
Upstream 100 bases:
>100_bases GGATGAAAAAAGGGTGGGCGGCGGCGCTGCGCCTCGTGCACAGGCCTGCCATTCGCGGCAAGATACGACTTCAAGTCCAC TTGAAGTCAAGAGGTGAGCC
Downstream 100 bases:
>100_bases GGGAGCCGGTACGGTCGCGGCAAAGTCGCGCCGGGCCGCTAGCCAGGGGTGACCGGCGGAGCAGGTTCCGGAAGGGGGCT GGTTCAACGTCCGTCGCGTC
Product: MerR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Cu(I)-Responsive Transcriptional Regulator; Regulatory Protein MerR; Transcriptional Regulator MerR Family Protein; Regulatory Protein; Redox-Sensitive Transcriptional Activator; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Transcriptional Activator; Redox-Sensitive Transcriptional Activator SoxR; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLDEISRMFAPDGKLAIDRRMLL AKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRLLQKASAQAAPRSGRRGAASPMDS
Sequences:
>Translated_143_residues MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLDEISRMFAPDGKLAIDRRMLL AKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRLLQKASAQAAPRSGRRGAASPMDS >Mature_143_residues MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLDEISRMFAPDGKLAIDRRMLL AKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRLLQKASAQAAPRSGRRGAASPMDS
Specific function: Activates The Transcription Of The Soxs Gene Which Itself Controls The Superoxide Response Regulon. Soxr Contains A 2fe-2s Iron-Sulfur Cluster That May Act As A Redox Sensor System That Recognizes Superoxide. The Variable Redox State Of The Fe-S Cluster I
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790498, Length=117, Percent_Identity=35.8974358974359, Blast_Score=61, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15388; Mature: 15388
Theoretical pI: Translated: 11.14; Mature: 11.14
Prosite motif: PS50937 HTH_MERR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLD CCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH EISRMFAPDGKLAIDRRMLLAKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRL HHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LQKASAQAAPRSGRRGAASPMDS HHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLD CCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH EISRMFAPDGKLAIDRRMLLAKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRL HHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LQKASAQAAPRSGRRGAASPMDS HHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA