The gene/protein map for NC_008752 is currently unavailable.
Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is soxR [C]

Identifier: 120611247

GI number: 120611247

Start: 2827104

End: 2827535

Strand: Direct

Name: soxR [C]

Synonym: Aave_2579

Alternate gene names: 120611247

Gene position: 2827104-2827535 (Clockwise)

Preceding gene: 120611245

Following gene: 120611258

Centisome position: 52.82

GC content: 67.82

Gene sequence:

>432_bases
ATGGAAATTGCCGAGGTGGCCAGGCGCTCGGGGGTGCCTGCGTCGGCACTGCGTTACTACGAAGGGAAGGGGCTGATCGC
GTCCGTCGGCCGGCAGGGCATCCGGCGTGTGTTCGGCCCCGATGTGCTGGAGCGGCTCGCGCTGATCGCGCTGGGGCGCA
GCGCAGGTTTCTCGCTGGACGAGATTTCACGCATGTTTGCGCCCGACGGCAAGCTGGCCATCGATCGCCGGATGCTGCTG
GCCAAGGCGGACGACATCGACCGCACGATCCTGAAATTGCGTGCGATGAGCGAAGGGCTGCGGCATGCGGCCGTATGCCC
GGCTCCTTCGCACATGGCATGCCCGTCGTTTCAGCGGCTGCTGCAGAAAGCTTCGGCCCAGGCCGCGCCCCGTAGCGGGC
GGCGCGGGGCGGCGAGTCCCATGGACTCTTGA

Upstream 100 bases:

>100_bases
GGATGAAAAAAGGGTGGGCGGCGGCGCTGCGCCTCGTGCACAGGCCTGCCATTCGCGGCAAGATACGACTTCAAGTCCAC
TTGAAGTCAAGAGGTGAGCC

Downstream 100 bases:

>100_bases
GGGAGCCGGTACGGTCGCGGCAAAGTCGCGCCGGGCCGCTAGCCAGGGGTGACCGGCGGAGCAGGTTCCGGAAGGGGGCT
GGTTCAACGTCCGTCGCGTC

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Cu(I)-Responsive Transcriptional Regulator; Regulatory Protein MerR; Transcriptional Regulator MerR Family Protein; Regulatory Protein; Redox-Sensitive Transcriptional Activator; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Transcriptional Activator; Redox-Sensitive Transcriptional Activator SoxR; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLDEISRMFAPDGKLAIDRRMLL
AKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRLLQKASAQAAPRSGRRGAASPMDS

Sequences:

>Translated_143_residues
MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLDEISRMFAPDGKLAIDRRMLL
AKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRLLQKASAQAAPRSGRRGAASPMDS
>Mature_143_residues
MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLDEISRMFAPDGKLAIDRRMLL
AKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRLLQKASAQAAPRSGRRGAASPMDS

Specific function: Activates The Transcription Of The Soxs Gene Which Itself Controls The Superoxide Response Regulon. Soxr Contains A 2fe-2s Iron-Sulfur Cluster That May Act As A Redox Sensor System That Recognizes Superoxide. The Variable Redox State Of The Fe-S Cluster I

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790498, Length=117, Percent_Identity=35.8974358974359, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15388; Mature: 15388

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLD
CCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
EISRMFAPDGKLAIDRRMLLAKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRL
HHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LQKASAQAAPRSGRRGAASPMDS
HHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEIAEVARRSGVPASALRYYEGKGLIASVGRQGIRRVFGPDVLERLALIALGRSAGFSLD
CCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
EISRMFAPDGKLAIDRRMLLAKADDIDRTILKLRAMSEGLRHAAVCPAPSHMACPSFQRL
HHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LQKASAQAAPRSGRRGAASPMDS
HHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA