| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120610957
Identifier: 120610957
GI number: 120610957
Start: 2513074
End: 2514444
Strand: Reverse
Name: 120610957
Synonym: Aave_2283
Alternate gene names: NA
Gene position: 2514444-2513074 (Counterclockwise)
Preceding gene: 120610958
Following gene: 120610956
Centisome position: 46.97
GC content: 72.21
Gene sequence:
>1371_bases ATGCACTCCGCCACGGGCTGCGGCACTGCCGCTCATTTCCGCGCAGGTCGTCTGCCCGCGCGGGTTGCCGGATGGCTGGC CGGGCTGCTGCTGGCGGCCTGGGCCGCCGCGGCCGCGGGCGCATCGCCCATCAAGCCACGGGAAGCAGCCCGGCCCGCAC CGCGGGCGGCCGAGCCCACGGCACTGCACATCTGGCACTGCTGGGCCTCGCCCGGCGAGCACCAGCGCAGCGAGGTGCTG GCGCGGCACCTGGCGCGGCACGGCCTGCACTGGACGATCGAGGAGCCGGTGTGCGGCAACGGCAACAGCGCGCTGTCGGT GTTCACCCAGCGCTTCCAGCATCGCCTGCCGCGCCCCGCCGCGGTGATGACGGCGGGCGAAGGCGCGCCGCCGCTGGCCG CCAAGGGCCTGCTGCTGCCGCTGGACGCCATCGCGCGGGAGCAGGAGTGGGAGGAAGTCGTGCCCTATGCCCTGCAGGAT TGGGCGCGCTTCCGCGTCCACTGGATCGCCGCGCCGCTGTTCGTGCATTCCACCAACCTGCTGTGGTTCAACAAGCCCCT GCTGGACCGCCTGGGCGGCACCGTGCCCGACACCTGGGACGAACTGCTGGAATTGCTCGGCCGCGCGCAGGCGGCGGGCA TCGTGCCGGTCGGGATCGGCGCCGATGCGTGGGAATACTCGTTCTGGTTCGAGTCCGTGGCGGCCGGCGCGGGCGGCGCG GAGTTCTACCGGCGGTTTTTCCTGGAGCACGACCGGCGCGCGTACGACGAAGCCATCGTGCGCCGCATCTTCGCGCGCAT GGCACAGCTGCGGCCCTACCTGCGCGCGAACGCCGCTTCCCGCGACTGGAGCAGCGCCAGCGACATGGTCGAAGAGGGCA AGGCGCTGCTGCAGATGCAGGGCAGCTGGCTGAACGGCGAATTGCGCCAGCGCGGGATGGAGGCCGGCCAGGACTACCTG TGTCCGCGCTTTCCGGACACGCAGGGCATGGTGCTCTACATCGGCGACCAGGTCGGCTTCGTGCGTGGCGCGCAGGTGGA CCCGGCCGCGCAGCGCGTCTTCATGCGCATGGTGATGGACACGGACTTCCAGCGCGAGATGGGCATCGCCAGCGGCGCGG CGCCCGCGCGCGTGGACGTGCCCGACACGGGGGCGGACCTGTGCGGCCGCCAGGCCATCCGGGACCTGCGCAGCGCGAAC ATGCGCCGCACGGTGCTCGCGGCCTTCTCTGCGCTGTCGCCGCGCTCGGTGCAGCAGCACATCAACGATATCGTCATGCA GCACCTGCAGGGCCGCATCGACGACGCGCGCGCCACGCAACGGCTCAAGGACCTGATCCTGGGCACCGGGCCGGTCGGGC CCGAGCGATGA
Upstream 100 bases:
>100_bases ACCGGCCCGCGGCCGCGGGCGCCGCGGAAGGGGACGAGGTGGACTGCGCACTAGAATCCGCGCCACCTCCTCCGTTCCAC CTCCACGACACGCGTTCTCC
Downstream 100 bases:
>100_bases GGGCGCCGGCACGGCGCCGCCCATTCGCCATCAAATCAATAGCACCCCGTCCATTGCGGGCAAGGGATTCCGTGCTTTTC TCCTGATGAGATGGAGGGCA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Immunogenic 39 kDa protein; P39 [H]
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MHSATGCGTAAHFRAGRLPARVAGWLAGLLLAAWAAAAAGASPIKPREAARPAPRAAEPTALHIWHCWASPGEHQRSEVL ARHLARHGLHWTIEEPVCGNGNSALSVFTQRFQHRLPRPAAVMTAGEGAPPLAAKGLLLPLDAIAREQEWEEVVPYALQD WARFRVHWIAAPLFVHSTNLLWFNKPLLDRLGGTVPDTWDELLELLGRAQAAGIVPVGIGADAWEYSFWFESVAAGAGGA EFYRRFFLEHDRRAYDEAIVRRIFARMAQLRPYLRANAASRDWSSASDMVEEGKALLQMQGSWLNGELRQRGMEAGQDYL CPRFPDTQGMVLYIGDQVGFVRGAQVDPAAQRVFMRMVMDTDFQREMGIASGAAPARVDVPDTGADLCGRQAIRDLRSAN MRRTVLAAFSALSPRSVQQHINDIVMQHLQGRIDDARATQRLKDLILGTGPVGPER
Sequences:
>Translated_456_residues MHSATGCGTAAHFRAGRLPARVAGWLAGLLLAAWAAAAAGASPIKPREAARPAPRAAEPTALHIWHCWASPGEHQRSEVL ARHLARHGLHWTIEEPVCGNGNSALSVFTQRFQHRLPRPAAVMTAGEGAPPLAAKGLLLPLDAIAREQEWEEVVPYALQD WARFRVHWIAAPLFVHSTNLLWFNKPLLDRLGGTVPDTWDELLELLGRAQAAGIVPVGIGADAWEYSFWFESVAAGAGGA EFYRRFFLEHDRRAYDEAIVRRIFARMAQLRPYLRANAASRDWSSASDMVEEGKALLQMQGSWLNGELRQRGMEAGQDYL CPRFPDTQGMVLYIGDQVGFVRGAQVDPAAQRVFMRMVMDTDFQREMGIASGAAPARVDVPDTGADLCGRQAIRDLRSAN MRRTVLAAFSALSPRSVQQHINDIVMQHLQGRIDDARATQRLKDLILGTGPVGPER >Mature_456_residues MHSATGCGTAAHFRAGRLPARVAGWLAGLLLAAWAAAAAGASPIKPREAARPAPRAAEPTALHIWHCWASPGEHQRSEVL ARHLARHGLHWTIEEPVCGNGNSALSVFTQRFQHRLPRPAAVMTAGEGAPPLAAKGLLLPLDAIAREQEWEEVVPYALQD WARFRVHWIAAPLFVHSTNLLWFNKPLLDRLGGTVPDTWDELLELLGRAQAAGIVPVGIGADAWEYSFWFESVAAGAGGA EFYRRFFLEHDRRAYDEAIVRRIFARMAQLRPYLRANAASRDWSSASDMVEEGKALLQMQGSWLNGELRQRGMEAGQDYL CPRFPDTQGMVLYIGDQVGFVRGAQVDPAAQRVFMRMVMDTDFQREMGIASGAAPARVDVPDTGADLCGRQAIRDLRSAN MRRTVLAAFSALSPRSVQQHINDIVMQHLQGRIDDARATQRLKDLILGTGPVGPER
Specific function: Part of a binding-protein-dependent transport system for a sugar (Potential) [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 50204; Mature: 50204
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSATGCGTAAHFRAGRLPARVAGWLAGLLLAAWAAAAAGASPIKPREAARPAPRAAEPT CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC ALHIWHCWASPGEHQRSEVLARHLARHGLHWTIEEPVCGNGNSALSVFTQRFQHRLPRPA EEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCC AVMTAGEGAPPLAAKGLLLPLDAIAREQEWEEVVPYALQDWARFRVHWIAAPLFVHSTNL EEEECCCCCCCHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE LWFNKPLLDRLGGTVPDTWDELLELLGRAQAAGIVPVGIGADAWEYSFWFESVAAGAGGA EEECCHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCHH EFYRRFFLEHDRRAYDEAIVRRIFARMAQLRPYLRANAASRDWSSASDMVEEGKALLQMQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC GSWLNGELRQRGMEAGQDYLCPRFPDTQGMVLYIGDQVGFVRGAQVDPAAQRVFMRMVMD CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC TDFQREMGIASGAAPARVDVPDTGADLCGRQAIRDLRSANMRRTVLAAFSALSPRSVQQH CCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHH INDIVMQHLQGRIDDARATQRLKDLILGTGPVGPER HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MHSATGCGTAAHFRAGRLPARVAGWLAGLLLAAWAAAAAGASPIKPREAARPAPRAAEPT CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC ALHIWHCWASPGEHQRSEVLARHLARHGLHWTIEEPVCGNGNSALSVFTQRFQHRLPRPA EEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCC AVMTAGEGAPPLAAKGLLLPLDAIAREQEWEEVVPYALQDWARFRVHWIAAPLFVHSTNL EEEECCCCCCCHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE LWFNKPLLDRLGGTVPDTWDELLELLGRAQAAGIVPVGIGADAWEYSFWFESVAAGAGGA EEECCHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCHH EFYRRFFLEHDRRAYDEAIVRRIFARMAQLRPYLRANAASRDWSSASDMVEEGKALLQMQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC GSWLNGELRQRGMEAGQDYLCPRFPDTQGMVLYIGDQVGFVRGAQVDPAAQRVFMRMVMD CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHC TDFQREMGIASGAAPARVDVPDTGADLCGRQAIRDLRSANMRRTVLAAFSALSPRSVQQH CCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHH INDIVMQHLQGRIDDARATQRLKDLILGTGPVGPER HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9009303; 10235622 [H]