| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is yegQ [C]
Identifier: 120610888
GI number: 120610888
Start: 2434707
End: 2436110
Strand: Reverse
Name: yegQ [C]
Synonym: Aave_2214
Alternate gene names: 120610888
Gene position: 2436110-2434707 (Counterclockwise)
Preceding gene: 120610889
Following gene: 120610886
Centisome position: 45.51
GC content: 70.3
Gene sequence:
>1404_bases ATGACGCTCCGCCCGCCCGAACTGCTGCTGCCCGCCGGCTCCCTCGACAGGATGCGCACGGCCTACGATTTCGGCGCCGA CGCCGTCTATGCGGGCCAGCCGCGCTATTCCCTGCGGGCACGCAACAACGAATTCCGGCTCGAACAGATCGGCCAGGGCA TCCGCGAGGCGCATGCGCGCGGCCGCAAGTTCTTCGTGACCAGCAACCTGCTGCCGCACGACGACAAGGTGCGCACCTAC CTGCGCGACATCGAGCCGGTGATCGCCCTGGGGCCCGACGCGCTCATCATGGCCGACCCGGGCCTCATCATGCTGGTGCG CGAGCGCTGGCCCGACATGCCCATCCACCTGTCGGTACAGGCCAACACGGTGAACGCGATGGCCGTGAAGTTCTGGCAGC GCATGGGCCTGGCGCGCATCATCCTCTCACGCGAACTGAGCCTGGACGAGATCGAGGGCATACGACAGCAGTGCCCGGAG ATCGAGCTGGAAGTGTTCGTGCATGGCGCACTGTGCATCGCCTACTCCGGCCGCTGCCTGCTATCGGGCTATTTCAACCG GCGCGATGCCAACCAGGGCACCTGCACCAATGCCTGCCGCTGGAGCTATGCGGCATCGCCGGGCACGGACGCCACCGACA GCGGCGAGGTCCGGCCGCTGCCGCTGGACGGCGGCTTCGATCCGCAGGCGGAGCAGGCCCGGGCCGACGGCGCCTTCGCG GCCTGCGGCGGCGCGCCCCGCCATCCGCTGGCCGACCACGCCTACCTGCTGGAAGAAAAGGAACGCCCCGGCGAGCTGAT GCCGGTGATGGAAGACGAACACGGCACCTACATCCTCAACAGCCGCGACCTGCGCGCCGTGGAGCACGTGCACCGGCTCG TGGCCATGGGCGTGGATTCCCTCAAGATCGAAGGCCGCACCAAGAGCCGCTACTACGTGGCGCGCACCGCCCAGGTGTAC CGCCGCGCCATCGACGATGCGGTGGCGGGCCGGGATTTCGATCCCGCCCTGCTGGTGGAACTCGACGGGCTGGCCCACCG CGGCTACACGGCCGGCTTCCTGCAGCGCCATCCGGCGCAGGACCTGCAGAACTATGGCACGGGCAGTTCGCAGCCCGTGC GCAGCCTGTTCGTGGGCGAGGTGGTGGCCTGCGGCGGAGGCTGGGCCGAGGTGGAGACCAGGAACCGCTTCGCGGTCGGC GACCGGCTGGAAATCATCCACCCCGCGGGCAACCGCACGGTCCGCCTGGAACGCATGCGGGCGGCCGCGAGCGGCGAGCC CCTGCACGTGGCGGCGGGCAGTCCGCTGCGCGTGCGCATTCCGCTGGAAGGCCCGGCGGAAGGCGCGATGCTCGCGCGCA TCCTCGATCCGGCCACCGCGGAGCCCGCGCAGGCACGGCCCTGA
Upstream 100 bases:
>100_bases GCGGGGCCGGAGGCTGAGGACAAAAGCCTGCGCCAGGTCAAGGAGCGCGCCGCGGCCGGGCGCCACAATCGCGCGCTCCA CCGCGCCCTGCCCTGCTCCC
Downstream 100 bases:
>100_bases CGGCGCGCGCAGGCAGCGTCAGGCCGTGCGCGGCTGCCCCGCCGCGAAGCCGGCCGGGTCCTGGTGGCGCAGCCCCATCC ACTGCAGCTCCCCCAGCACC
Product: peptidase U32
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MTLRPPELLLPAGSLDRMRTAYDFGADAVYAGQPRYSLRARNNEFRLEQIGQGIREAHARGRKFFVTSNLLPHDDKVRTY LRDIEPVIALGPDALIMADPGLIMLVRERWPDMPIHLSVQANTVNAMAVKFWQRMGLARIILSRELSLDEIEGIRQQCPE IELEVFVHGALCIAYSGRCLLSGYFNRRDANQGTCTNACRWSYAASPGTDATDSGEVRPLPLDGGFDPQAEQARADGAFA ACGGAPRHPLADHAYLLEEKERPGELMPVMEDEHGTYILNSRDLRAVEHVHRLVAMGVDSLKIEGRTKSRYYVARTAQVY RRAIDDAVAGRDFDPALLVELDGLAHRGYTAGFLQRHPAQDLQNYGTGSSQPVRSLFVGEVVACGGGWAEVETRNRFAVG DRLEIIHPAGNRTVRLERMRAAASGEPLHVAAGSPLRVRIPLEGPAEGAMLARILDPATAEPAQARP
Sequences:
>Translated_467_residues MTLRPPELLLPAGSLDRMRTAYDFGADAVYAGQPRYSLRARNNEFRLEQIGQGIREAHARGRKFFVTSNLLPHDDKVRTY LRDIEPVIALGPDALIMADPGLIMLVRERWPDMPIHLSVQANTVNAMAVKFWQRMGLARIILSRELSLDEIEGIRQQCPE IELEVFVHGALCIAYSGRCLLSGYFNRRDANQGTCTNACRWSYAASPGTDATDSGEVRPLPLDGGFDPQAEQARADGAFA ACGGAPRHPLADHAYLLEEKERPGELMPVMEDEHGTYILNSRDLRAVEHVHRLVAMGVDSLKIEGRTKSRYYVARTAQVY RRAIDDAVAGRDFDPALLVELDGLAHRGYTAGFLQRHPAQDLQNYGTGSSQPVRSLFVGEVVACGGGWAEVETRNRFAVG DRLEIIHPAGNRTVRLERMRAAASGEPLHVAAGSPLRVRIPLEGPAEGAMLARILDPATAEPAQARP >Mature_466_residues TLRPPELLLPAGSLDRMRTAYDFGADAVYAGQPRYSLRARNNEFRLEQIGQGIREAHARGRKFFVTSNLLPHDDKVRTYL RDIEPVIALGPDALIMADPGLIMLVRERWPDMPIHLSVQANTVNAMAVKFWQRMGLARIILSRELSLDEIEGIRQQCPEI ELEVFVHGALCIAYSGRCLLSGYFNRRDANQGTCTNACRWSYAASPGTDATDSGEVRPLPLDGGFDPQAEQARADGAFAA CGGAPRHPLADHAYLLEEKERPGELMPVMEDEHGTYILNSRDLRAVEHVHRLVAMGVDSLKIEGRTKSRYYVARTAQVYR RAIDDAVAGRDFDPALLVELDGLAHRGYTAGFLQRHPAQDLQNYGTGSSQPVRSLFVGEVVACGGGWAEVETRNRFAVGD RLEIIHPAGNRTVRLERMRAAASGEPLHVAAGSPLRVRIPLEGPAEGAMLARILDPATAEPAQARP
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI1788397, Length=442, Percent_Identity=58.1447963800905, Blast_Score=492, Evalue=1e-140, Organism=Escherichia coli, GI1789548, Length=337, Percent_Identity=31.7507418397626, Blast_Score=133, Evalue=3e-32, Organism=Escherichia coli, GI87081910, Length=198, Percent_Identity=39.8989898989899, Blast_Score=132, Evalue=5e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001539 [H]
Pfam domain/function: PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 51441; Mature: 51310
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS01276 PEPTIDASE_U32
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLRPPELLLPAGSLDRMRTAYDFGADAVYAGQPRYSLRARNNEFRLEQIGQGIREAHAR CCCCCCCCEECCCCHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHC GRKFFVTSNLLPHDDKVRTYLRDIEPVIALGPDALIMADPGLIMLVRERWPDMPIHLSVQ CCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCEEEEEHHHCCCCCEEEEEE ANTVNAMAVKFWQRMGLARIILSRELSLDEIEGIRQQCPEIELEVFVHGALCIAYSGRCL CCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCEE LSGYFNRRDANQGTCTNACRWSYAASPGTDATDSGEVRPLPLDGGFDPQAEQARADGAFA EEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEE ACGGAPRHPLADHAYLLEEKERPGELMPVMEDEHGTYILNSRDLRAVEHVHRLVAMGVDS ECCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHCCCC LKIEGRTKSRYYVARTAQVYRRAIDDAVAGRDFDPALLVELDGLAHRGYTAGFLQRHPAQ EEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCCCHH DLQNYGTGSSQPVRSLFVGEVVACGGGWAEVETRNRFAVGDRLEIIHPAGNRTVRLERMR HHHHCCCCCCCHHHHHHHHHHEECCCCEEEEECCCEEEECCCEEEEECCCCCEEEEEEHH AAASGEPLHVAAGSPLRVRIPLEGPAEGAMLARILDPATAEPAQARP HHCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TLRPPELLLPAGSLDRMRTAYDFGADAVYAGQPRYSLRARNNEFRLEQIGQGIREAHAR CCCCCCCEECCCCHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHC GRKFFVTSNLLPHDDKVRTYLRDIEPVIALGPDALIMADPGLIMLVRERWPDMPIHLSVQ CCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCEEEEEHHHCCCCCEEEEEE ANTVNAMAVKFWQRMGLARIILSRELSLDEIEGIRQQCPEIELEVFVHGALCIAYSGRCL CCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCEE LSGYFNRRDANQGTCTNACRWSYAASPGTDATDSGEVRPLPLDGGFDPQAEQARADGAFA EEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCEE ACGGAPRHPLADHAYLLEEKERPGELMPVMEDEHGTYILNSRDLRAVEHVHRLVAMGVDS ECCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHCCCC LKIEGRTKSRYYVARTAQVYRRAIDDAVAGRDFDPALLVELDGLAHRGYTAGFLQRHPAQ EEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCCCHH DLQNYGTGSSQPVRSLFVGEVVACGGGWAEVETRNRFAVGDRLEIIHPAGNRTVRLERMR HHHHCCCCCCCHHHHHHHHHHEECCCCEEEEECCCEEEECCCEEEEECCCCCEEEEEEHH AAASGEPLHVAAGSPLRVRIPLEGPAEGAMLARILDPATAEPAQARP HHCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]