| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is ppc [H]
Identifier: 120610680
GI number: 120610680
Start: 2172455
End: 2175310
Strand: Direct
Name: ppc [H]
Synonym: Aave_2000
Alternate gene names: 120610680
Gene position: 2172455-2175310 (Clockwise)
Preceding gene: 120610675
Following gene: 120610681
Centisome position: 40.59
GC content: 71.04
Gene sequence:
>2856_bases ATGAATGCGACGCCTTCCCGCAAGACCGACACCGCGCCCGAACCCCAGGCCTCGCCGTCGCCCGGACGCCGCGCCGACAA GGACCAGCCGCTGATCCAGGACATCCGCCTGCTCGGGCGCATCCTGGGCGACGTGATCCGCGAGCAGGAGGGCGTGGCCG CCTACGACCTCGTGGAACAGGTGCGCAAGCTGTCGGTGGCGTTCCGCCGCGATGCGGACCAGGAGGCGGACAAGGCGCTC AAGAAGCTGCTCAAGGGCCTGTCGGGCGACCAGACGGTGAGCGTGATCCGCGCCTTCACGTATTTCAGCCACCTGGCGAA CCTCGCCGAGGACCGGCACCACATCCGCCGCCGCACCGTGCACGAGCGCGCCGGCAGCACGCAGGAAGGCAGCATCGAGG TGGCCCTGGCCCGGCTGCGCTGGGCGGGCATCGCGCCGCGCGCCGTGGCGCAGACGCTGGCACGCAGCTACGTGTCGCCG GTGCTGACCGCGCACCCGACGGAGGTGCAGCGCAAGAGCATCCTGGACGCGGAGCGCGACATCGCCGAACTGCTGGCCGA GCGCGACGAGATCCAGGCGCGGGGGCTGTTCTACAAGTCCGCGCGCGATGCGCTCACGCCGCGCGAGCTGGCGGCCAACG AGGCGCGGCTGCGCGCCCGCGTCGCGCAACTGTGGCAGACCCGGTTGCTGCGCTATTCGAAGCTCACGGTGGCCGACGAG ATCGAGAACGCGCTCTCCTATTACGAATCGACCTTCCTGCGCGAGATCCCGCGCCTGTACGAGGACCTGGAGCGGGCGCT GGGCAGCCAGCCGGTGGCGAGCTTCCTGCGCATGGGCCAGTGGATCGGCGGCGACCGCGACGGCAATCCCAACGTGAGCG CCGACACGCTGGCGCTCGCACTGCGCCGCCAGGCCGAGGTGGCGCTGCGCCACTACCTGACCGAGGTGCACTACCTGGGC GGCGAGCTGTCGCTGTCGGCCCGGCTCGTGCAGGTCTCTCCGGAGATGCAACAGTTGGCCGAACGCTCGCCCGACACCAG CGAGCACCGCCAGGACGAGCCCTACCGCCGCGCGCTCACCGGCATCTATGCGCGGCTGGCGGCGACGCTGCGCGAATTGA CGGGCGGCGAGGCGGCGCGCCATGCCGTGGCGCCCCAGAACCCGTACGGCGACGCTTCGGAGTTCCTGGCGGACCTGCGC GTCATCGAGGCCTCGCTGCGGTCGCACCGCGGGGCGCCGCTGGCGGCGCAGCGGCTGCATCCGCTGGTGCGGGCCGTGGA GGTGTTCGGCTTCCACCTGGCCACGGTGGACCTGCGGCAGAGCTCCGACCAGCACGAGCGCGTGGTGGCGGAGCTGCTGG CCACGGCCCGGATCGAGGCTGATTACGCGGCCCTGCCGGAAGATGCGCGCCAGGCCCTGCTGGTGCGCCTGCTGTGCGAC GCCCGGCCGCTGCGCGTGGTGGGCGCGGAATACTCGGAGCACACGCGCGGCGAGATCGCCATCTTCGAGACGGCGCGGCG CATGCGCGACCGCTACGGCGCCCAGGCCATCCGGCACTACATCATCAGCCACACCGAGACGGTGAGCGACCTGCTGGAAG TGCTGCTGCTGCAGAAGGAAGTGGGCCTGATGCACGGCACGCTGGACGGGGCCGATGCCCGCGCCGACCTGATCGTGGTG CCGCTCTTCGAGACCATCGGCGACCTGCGCAACGCCCAGCCCATCATGCGCGCGCTCTACGAGGTGCCGGGCTTCGCGGC GATGGTGCAGCGCGGCGGGGCCGAGCAGGACATCATGCTGGGCTACTCGGACAGCAACAAGGACGGCGGCATCTTCACCA GCAACTGGGAGCTGTACCGCGCCGAGATCGCGCTGGTGGAGCTGTTCGACGCGCTGGAGGCGCGGCACCGCATCCGCCTG CGGCTCTTCCACGGCCGCGGCGGCACGGTGGGGCGCGGCGGCGGCCCGAGCTACCAGGCCATCCTGGCGCAGCCGCCCGG CACGGTGCGCGGGCAGATCCGCCTGACCGAGCAGGGCGAGGTGATCGCCTCCAAATATGCCAACCCGGAGATCGGCCGGC GCAACCTGGAGACGCTGGTGGCGGCCACGCTGGAGGCCACGCTGCTGCAGCCCACCAAGCCTGCCACCAAGGCCTTCCAC GAGGCCGCGGCCGAACTCTCGCAGGCGAGCATGGCGGCCTACCGCGCGCTGGTGTACGAGACGCCGGGCTTCGCCGACTA TTTCTTCAACTCCACGCCGATCCGGGAGATCGCCGAGCTCAACATCGGCTCGCGCCCGGCCTCGCGCAAGCCGAGCCAGA AGATCGAGGACCTGCGCGCCATCCCCTGGGGGTTCAGCTGGGGCCAGTGCCGGCTCACGCTGCCGGGCTGGTACGGCTTC GGATCGGCCGTGGAGGCCTTCGTGAAGGCCGCGGGCGAGGATCCCAAGGCCCGCATGGCGCTGCTGCAGAAGATGTACCG GCAGTGGCCGTTCTTCCGCACGCTGCTGTCCAACATGGACATGGTGCTGGCCAAGAGCGATCTGGCCCTGGCGTCGCGCT ACAGCGAACTGGTGGCGGACGCGCGCCTGCGGCGCAAGGTGTTCGGTGCCATCGAGGCCGAATGGCAGCGCACGGTGGAT GCGCTGGCGCGCATCACCGGCGACCGGCAGCGGCTGGCCCACAACACGGCCCTGGCGCGCTCGATCCGCCACCGTTTCCC CTACATCGATCCGCTGCACCACCTGCAGGTGGAACTGGTGCGGCGCTGGCGCGCGGGCGAGGGCAGCGAGCGCGTGCAGA CCGGTATCCACATCTGCATCAACGGCATAGCGGCGGGTCTGCGCAATACCGGCTGA
Upstream 100 bases:
>100_bases CAGGCCGGGCGGGCGGAAGGCTCGGCAGGCCTGGCGGGGATGCTAGCATGCTGCGCCGCAGCACCTGCCCGTCGTGCGCG CGCCCCAGGAGACCTTCTGC
Downstream 100 bases:
>100_bases GGGCGCGGGCCTGCTTCTTGCTCGCGATGGTGCCGGCGCGCGATGGCGCCGTGCACGGACACCGGCGAAGGCAGCGTGAA TGGAACCGAGAACAACGACA
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 951; Mature: 951
Protein sequence:
>951_residues MNATPSRKTDTAPEPQASPSPGRRADKDQPLIQDIRLLGRILGDVIREQEGVAAYDLVEQVRKLSVAFRRDADQEADKAL KKLLKGLSGDQTVSVIRAFTYFSHLANLAEDRHHIRRRTVHERAGSTQEGSIEVALARLRWAGIAPRAVAQTLARSYVSP VLTAHPTEVQRKSILDAERDIAELLAERDEIQARGLFYKSARDALTPRELAANEARLRARVAQLWQTRLLRYSKLTVADE IENALSYYESTFLREIPRLYEDLERALGSQPVASFLRMGQWIGGDRDGNPNVSADTLALALRRQAEVALRHYLTEVHYLG GELSLSARLVQVSPEMQQLAERSPDTSEHRQDEPYRRALTGIYARLAATLRELTGGEAARHAVAPQNPYGDASEFLADLR VIEASLRSHRGAPLAAQRLHPLVRAVEVFGFHLATVDLRQSSDQHERVVAELLATARIEADYAALPEDARQALLVRLLCD ARPLRVVGAEYSEHTRGEIAIFETARRMRDRYGAQAIRHYIISHTETVSDLLEVLLLQKEVGLMHGTLDGADARADLIVV PLFETIGDLRNAQPIMRALYEVPGFAAMVQRGGAEQDIMLGYSDSNKDGGIFTSNWELYRAEIALVELFDALEARHRIRL RLFHGRGGTVGRGGGPSYQAILAQPPGTVRGQIRLTEQGEVIASKYANPEIGRRNLETLVAATLEATLLQPTKPATKAFH EAAAELSQASMAAYRALVYETPGFADYFFNSTPIREIAELNIGSRPASRKPSQKIEDLRAIPWGFSWGQCRLTLPGWYGF GSAVEAFVKAAGEDPKARMALLQKMYRQWPFFRTLLSNMDMVLAKSDLALASRYSELVADARLRRKVFGAIEAEWQRTVD ALARITGDRQRLAHNTALARSIRHRFPYIDPLHHLQVELVRRWRAGEGSERVQTGIHICINGIAAGLRNTG
Sequences:
>Translated_951_residues MNATPSRKTDTAPEPQASPSPGRRADKDQPLIQDIRLLGRILGDVIREQEGVAAYDLVEQVRKLSVAFRRDADQEADKAL KKLLKGLSGDQTVSVIRAFTYFSHLANLAEDRHHIRRRTVHERAGSTQEGSIEVALARLRWAGIAPRAVAQTLARSYVSP VLTAHPTEVQRKSILDAERDIAELLAERDEIQARGLFYKSARDALTPRELAANEARLRARVAQLWQTRLLRYSKLTVADE IENALSYYESTFLREIPRLYEDLERALGSQPVASFLRMGQWIGGDRDGNPNVSADTLALALRRQAEVALRHYLTEVHYLG GELSLSARLVQVSPEMQQLAERSPDTSEHRQDEPYRRALTGIYARLAATLRELTGGEAARHAVAPQNPYGDASEFLADLR VIEASLRSHRGAPLAAQRLHPLVRAVEVFGFHLATVDLRQSSDQHERVVAELLATARIEADYAALPEDARQALLVRLLCD ARPLRVVGAEYSEHTRGEIAIFETARRMRDRYGAQAIRHYIISHTETVSDLLEVLLLQKEVGLMHGTLDGADARADLIVV PLFETIGDLRNAQPIMRALYEVPGFAAMVQRGGAEQDIMLGYSDSNKDGGIFTSNWELYRAEIALVELFDALEARHRIRL RLFHGRGGTVGRGGGPSYQAILAQPPGTVRGQIRLTEQGEVIASKYANPEIGRRNLETLVAATLEATLLQPTKPATKAFH EAAAELSQASMAAYRALVYETPGFADYFFNSTPIREIAELNIGSRPASRKPSQKIEDLRAIPWGFSWGQCRLTLPGWYGF GSAVEAFVKAAGEDPKARMALLQKMYRQWPFFRTLLSNMDMVLAKSDLALASRYSELVADARLRRKVFGAIEAEWQRTVD ALARITGDRQRLAHNTALARSIRHRFPYIDPLHHLQVELVRRWRAGEGSERVQTGIHICINGIAAGLRNTG >Mature_951_residues MNATPSRKTDTAPEPQASPSPGRRADKDQPLIQDIRLLGRILGDVIREQEGVAAYDLVEQVRKLSVAFRRDADQEADKAL KKLLKGLSGDQTVSVIRAFTYFSHLANLAEDRHHIRRRTVHERAGSTQEGSIEVALARLRWAGIAPRAVAQTLARSYVSP VLTAHPTEVQRKSILDAERDIAELLAERDEIQARGLFYKSARDALTPRELAANEARLRARVAQLWQTRLLRYSKLTVADE IENALSYYESTFLREIPRLYEDLERALGSQPVASFLRMGQWIGGDRDGNPNVSADTLALALRRQAEVALRHYLTEVHYLG GELSLSARLVQVSPEMQQLAERSPDTSEHRQDEPYRRALTGIYARLAATLRELTGGEAARHAVAPQNPYGDASEFLADLR VIEASLRSHRGAPLAAQRLHPLVRAVEVFGFHLATVDLRQSSDQHERVVAELLATARIEADYAALPEDARQALLVRLLCD ARPLRVVGAEYSEHTRGEIAIFETARRMRDRYGAQAIRHYIISHTETVSDLLEVLLLQKEVGLMHGTLDGADARADLIVV PLFETIGDLRNAQPIMRALYEVPGFAAMVQRGGAEQDIMLGYSDSNKDGGIFTSNWELYRAEIALVELFDALEARHRIRL RLFHGRGGTVGRGGGPSYQAILAQPPGTVRGQIRLTEQGEVIASKYANPEIGRRNLETLVAATLEATLLQPTKPATKAFH EAAAELSQASMAAYRALVYETPGFADYFFNSTPIREIAELNIGSRPASRKPSQKIEDLRAIPWGFSWGQCRLTLPGWYGF GSAVEAFVKAAGEDPKARMALLQKMYRQWPFFRTLLSNMDMVLAKSDLALASRYSELVADARLRRKVFGAIEAEWQRTVD ALARITGDRQRLAHNTALARSIRHRFPYIDPLHHLQVELVRRWRAGEGSERVQTGIHICINGIAAGLRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=943, Percent_Identity=34.4644750795334, Blast_Score=423, Evalue=1e-119,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 106031; Mature: 106031
Theoretical pI: Translated: 9.19; Mature: 9.19
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNATPSRKTDTAPEPQASPSPGRRADKDQPLIQDIRLLGRILGDVIREQEGVAAYDLVEQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VRKLSVAFRRDADQEADKALKKLLKGLSGDQTVSVIRAFTYFSHLANLAEDRHHIRRRTV HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HERAGSTQEGSIEVALARLRWAGIAPRAVAQTLARSYVSPVLTAHPTEVQRKSILDAERD HHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IAELLAERDEIQARGLFYKSARDALTPRELAANEARLRARVAQLWQTRLLRYSKLTVADE HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IENALSYYESTFLREIPRLYEDLERALGSQPVASFLRMGQWIGGDRDGNPNVSADTLALA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LRRQAEVALRHYLTEVHYLGGELSLSARLVQVSPEMQQLAERSPDTSEHRQDEPYRRALT HHHHHHHHHHHHHHHHHHCCCCEEHHHEEEECCHHHHHHHHCCCCCCHHCCCCHHHHHHH GIYARLAATLRELTGGEAARHAVAPQNPYGDASEFLADLRVIEASLRSHRGAPLAAQRLH HHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH PLVRAVEVFGFHLATVDLRQSSDQHERVVAELLATARIEADYAALPEDARQALLVRLLCD HHHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHC ARPLRVVGAEYSEHTRGEIAIFETARRMRDRYGAQAIRHYIISHTETVSDLLEVLLLQKE CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLMHGTLDGADARADLIVVPLFETIGDLRNAQPIMRALYEVPGFAAMVQRGGAEQDIML HHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEE GYSDSNKDGGIFTSNWELYRAEIALVELFDALEARHRIRLRLFHGRGGTVGRGGGPSYQA EECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCEE ILAQPPGTVRGQIRLTEQGEVIASKYANPEIGRRNLETLVAATLEATLLQPTKPATKAFH EEECCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH EAAAELSQASMAAYRALVYETPGFADYFFNSTPIREIAELNIGSRPASRKPSQKIEDLRA HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHC IPWGFSWGQCRLTLPGWYGFGSAVEAFVKAAGEDPKARMALLQKMYRQWPFFRTLLSNMD CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHCCCH MVLAKSDLALASRYSELVADARLRRKVFGAIEAEWQRTVDALARITGDRQRLAHNTALAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SIRHRFPYIDPLHHLQVELVRRWRAGEGSERVQTGIHICINGIAAGLRNTG HHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNATPSRKTDTAPEPQASPSPGRRADKDQPLIQDIRLLGRILGDVIREQEGVAAYDLVEQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VRKLSVAFRRDADQEADKALKKLLKGLSGDQTVSVIRAFTYFSHLANLAEDRHHIRRRTV HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HERAGSTQEGSIEVALARLRWAGIAPRAVAQTLARSYVSPVLTAHPTEVQRKSILDAERD HHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IAELLAERDEIQARGLFYKSARDALTPRELAANEARLRARVAQLWQTRLLRYSKLTVADE HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IENALSYYESTFLREIPRLYEDLERALGSQPVASFLRMGQWIGGDRDGNPNVSADTLALA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH LRRQAEVALRHYLTEVHYLGGELSLSARLVQVSPEMQQLAERSPDTSEHRQDEPYRRALT HHHHHHHHHHHHHHHHHHCCCCEEHHHEEEECCHHHHHHHHCCCCCCHHCCCCHHHHHHH GIYARLAATLRELTGGEAARHAVAPQNPYGDASEFLADLRVIEASLRSHRGAPLAAQRLH HHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH PLVRAVEVFGFHLATVDLRQSSDQHERVVAELLATARIEADYAALPEDARQALLVRLLCD HHHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHC ARPLRVVGAEYSEHTRGEIAIFETARRMRDRYGAQAIRHYIISHTETVSDLLEVLLLQKE CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLMHGTLDGADARADLIVVPLFETIGDLRNAQPIMRALYEVPGFAAMVQRGGAEQDIML HHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHCCCHHHHHHCCCCCCCEEE GYSDSNKDGGIFTSNWELYRAEIALVELFDALEARHRIRLRLFHGRGGTVGRGGGPSYQA EECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCEE ILAQPPGTVRGQIRLTEQGEVIASKYANPEIGRRNLETLVAATLEATLLQPTKPATKAFH EEECCCCCCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH EAAAELSQASMAAYRALVYETPGFADYFFNSTPIREIAELNIGSRPASRKPSQKIEDLRA HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHC IPWGFSWGQCRLTLPGWYGFGSAVEAFVKAAGEDPKARMALLQKMYRQWPFFRTLLSNMD CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHCCCH MVLAKSDLALASRYSELVADARLRRKVFGAIEAEWQRTVDALARITGDRQRLAHNTALAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH SIRHRFPYIDPLHHLQVELVRRWRAGEGSERVQTGIHICINGIAAGLRNTG HHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA