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The map label for this gene is ybhD [H]

Identifier: 120610333

GI number: 120610333

Start: 1809075

End: 1809980

Strand: Reverse

Name: ybhD [H]

Synonym: Aave_1650

Alternate gene names: 120610333

Gene position: 1809980-1809075 (Counterclockwise)

Preceding gene: 120610351

Following gene: 120610332

Centisome position: 33.81

GC content: 74.61

Gene sequence:

>906_bases
ATGAAACTCGATCCCGTGTCCCTGCGCCTCTTCGTGGCGGTGATGGAAGAGAACGCCATCGCCCGCGCCGCCGCGCGCGA
GCACATCGCCGCCTCGGCCGCCAGCCGCCGGCTCGCGGAACTGGAGGACGCCCTGGGCGTGGACCTGTTCGCCCGCAGCA
ACCGCGGCAGCGAGCCCACGGCCGCCGCCTACGCGCTGCTGCACATGGCGCGCGGCGTGCTCAACGACCTGGACGGCATC
GCCGCGCAGATGGGCGACTACCGCGCCGGCGTGCGCGGGCAGGTGCGCGTGGTGGCCAACATCTCCGCCATCACCCAGTT
CCTGCCCGGGGACCTGCAGCGCTTCATGGCGGCCCACCCCCAGGTGCAGGTGCGGCTGGAGGAGCAGATCAGCAGCGCCA
TCGCCCGCTCCGTGGCGGAGAACGCGGCCGACATCGGCATCCTCAACCACGGCAACTACGGCGACCGCGTCACGCTGCTG
CCCTACCGCGAGGACGAACTCGTGCTGGTGGCGCCCCGGGGCCATGCGCTGGCGCGGCGGCGCAGCGTGCGCCTGGCCGA
GGCGCTGCATTGCGACTTCGTCGGCGTGCATCCCGGCAGTGCCATCAACAACCTGCTCACGCGCGCTGCCGCGGACGCCG
GCCGGCCCCTGCGGCTGCGCATCCAGGTGACCAGCTACGACGCGCTCTGCCTGATGGTGTCCGCCGGGCTCGGCGTCGGC
GTGCTGCCGCGCGGCAGCGCCCGGCTCTACCTGGGCACCCTGCCGCTGCGCACCGTGGCGCTGGCCGAGCCCTGGGCGCG
GCGCCAGCTGTCGCTGTGCGTGCGGGCGGGCGACACGCTCTCCAGCGCGGCGCGCCTGCTCGTGGACCACCTGCGCGCGG
CGCCGCCCGCGGAGGCCGCGCCATGA

Upstream 100 bases:

>100_bases
TCGTCTCCTGCATGGCGCGCATCATGCCCAGCACCGGCACGGCCGCAAAACGCCCAATCGAGAAGGTGCCATCGCAAAAC
GGCATGGCAGACTAGCGCCC

Downstream 100 bases:

>100_bases
CCACCGCCCCGCCCCTTTCCTGGGACGTCTTCTGCCGCGTCATCGACAACTTCGGCGACATCGGTGTCTGCTGGCGCCTC
GCGGCCCAGCTCGGCGCGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKLDPVSLRLFVAVMEENAIARAAAREHIAASAASRRLAELEDALGVDLFARSNRGSEPTAAAYALLHMARGVLNDLDGI
AAQMGDYRAGVRGQVRVVANISAITQFLPGDLQRFMAAHPQVQVRLEEQISSAIARSVAENAADIGILNHGNYGDRVTLL
PYREDELVLVAPRGHALARRRSVRLAEALHCDFVGVHPGSAINNLLTRAAADAGRPLRLRIQVTSYDALCLMVSAGLGVG
VLPRGSARLYLGTLPLRTVALAEPWARRQLSLCVRAGDTLSSAARLLVDHLRAAPPAEAAP

Sequences:

>Translated_301_residues
MKLDPVSLRLFVAVMEENAIARAAAREHIAASAASRRLAELEDALGVDLFARSNRGSEPTAAAYALLHMARGVLNDLDGI
AAQMGDYRAGVRGQVRVVANISAITQFLPGDLQRFMAAHPQVQVRLEEQISSAIARSVAENAADIGILNHGNYGDRVTLL
PYREDELVLVAPRGHALARRRSVRLAEALHCDFVGVHPGSAINNLLTRAAADAGRPLRLRIQVTSYDALCLMVSAGLGVG
VLPRGSARLYLGTLPLRTVALAEPWARRQLSLCVRAGDTLSSAARLLVDHLRAAPPAEAAP
>Mature_301_residues
MKLDPVSLRLFVAVMEENAIARAAAREHIAASAASRRLAELEDALGVDLFARSNRGSEPTAAAYALLHMARGVLNDLDGI
AAQMGDYRAGVRGQVRVVANISAITQFLPGDLQRFMAAHPQVQVRLEEQISSAIARSVAENAADIGILNHGNYGDRVTLL
PYREDELVLVAPRGHALARRRSVRLAEALHCDFVGVHPGSAINNLLTRAAADAGRPLRLRIQVTSYDALCLMVSAGLGVG
VLPRGSARLYLGTLPLRTVALAEPWARRQLSLCVRAGDTLSSAARLLVDHLRAAPPAEAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=29.5774647887324, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=29.1525423728814, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787530, Length=246, Percent_Identity=26.8292682926829, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789204, Length=264, Percent_Identity=26.1363636363636, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=282, Percent_Identity=27.6595744680851, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI157672245, Length=278, Percent_Identity=24.4604316546763, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788887, Length=278, Percent_Identity=24.4604316546763, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788748, Length=287, Percent_Identity=27.5261324041812, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786713, Length=250, Percent_Identity=28, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367136, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=116, Percent_Identity=32.7586206896552, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790399, Length=298, Percent_Identity=23.8255033557047, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=238, Percent_Identity=21.8487394957983, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32157; Mature: 32157

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDPVSLRLFVAVMEENAIARAAAREHIAASAASRRLAELEDALGVDLFARSNRGSEPT
CCCCHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHH
AAAYALLHMARGVLNDLDGIAAQMGDYRAGVRGQVRVVANISAITQFLPGDLQRFMAAHP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHCCHHHHHHHHCCC
QVQVRLEEQISSAIARSVAENAADIGILNHGNYGDRVTLLPYREDELVLVAPRGHALARR
CEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEECCCCEEEECCCCHHHHHH
RSVRLAEALHCDFVGVHPGSAINNLLTRAAADAGRPLRLRIQVTSYDALCLMVSAGLGVG
HHHHHHHHHHCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCCCC
VLPRGSARLYLGTLPLRTVALAEPWARRQLSLCVRAGDTLSSAARLLVDHLRAAPPAEAA
CCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
P
C
>Mature Secondary Structure
MKLDPVSLRLFVAVMEENAIARAAAREHIAASAASRRLAELEDALGVDLFARSNRGSEPT
CCCCHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHH
AAAYALLHMARGVLNDLDGIAAQMGDYRAGVRGQVRVVANISAITQFLPGDLQRFMAAHP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHCCHHHHHHHHCCC
QVQVRLEEQISSAIARSVAENAADIGILNHGNYGDRVTLLPYREDELVLVAPRGHALARR
CEEEEHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEECCCCEEEECCCCHHHHHH
RSVRLAEALHCDFVGVHPGSAINNLLTRAAADAGRPLRLRIQVTSYDALCLMVSAGLGVG
HHHHHHHHHHCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCCCC
VLPRGSARLYLGTLPLRTVALAEPWARRQLSLCVRAGDTLSSAARLLVDHLRAAPPAEAA
CCCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]