Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yfgM [C]
Identifier: 120610113
GI number: 120610113
Start: 1567067
End: 1567732
Strand: Direct
Name: yfgM [C]
Synonym: Aave_1426
Alternate gene names: 120610113
Gene position: 1567067-1567732 (Clockwise)
Preceding gene: 120610112
Following gene: 120610114
Centisome position: 29.28
GC content: 66.22
Gene sequence:
>666_bases ATGGCAAAACACCTCGACCTCGAAGAACAAGAACAGCTCGACCAGCTCAAGCATTTCTGGAATGCCTGGGGCACCCTCAT CAGCGGGGTGCTGGTCGTGATCTTTGGCGGTGTGGCCGCCTGGAACGGCTACCACTATTGGCAGAACCAGCAGGCAGGGC AGGCCGCCGCGCTGTCCGATGCCGTGCAGGTCGCGGTGCAGGGCGGCGACGCGGCCCGCGCCACGCAGGCCTTCGACGAC CTCAAGTCCCGCTACGGCGGCACCGTGCAGGCCGCCCAGGCGGGCCTGCTGGCCGCGAAGGCCATGGTGGACAGCGGCAA CCCCGACGGGGCCAAGCCCATCCTGCAGTGGCTGGCCGACAACGCGTCCGATGACGGCTACAAGGCCATCGCCTCGCTGC GGTTGTCGAGTCTGCTCATCGACCAGAAGGCCTATGACGAGGCCCTGTCGCGCCTTTCCGGCAAGTTCCCGCCCCAATTC GATCCCATGATCGCGGACCGCAAGGGCGATGTGCTGGCACTGCAGGGCAAGAAGGCCGAGGCGATCGCCGAATACCAGAA AGCATACAAGGGCCTCGAGGACGGAACCGAATACCGCCGCGTCGTCGAGGTGAAGCTGGGCAGCCTGGGCGTCCAGGCGC GTGCAGACGGAGAGGCCGCAAAGTGA
Upstream 100 bases:
>100_bases GGAGCAGGGCGCAGAGCAGGTCGAGCGGCGCCTCGACGAAATCCCCGCCTGGGCCGCCACCCTACAATCCTCCCGCTAAT CCTGTCGCGAACCCTTATTC
Downstream 100 bases:
>100_bases CACAGCAGCACAACTTCGAGCGCGGCGCCCGCCGCGCGGGCCTGGCCCTCATCGTGGCGGCCGCCACACTGGCTTCCGGG TGCTCCCTGTGGGGTGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MAKHLDLEEQEQLDQLKHFWNAWGTLISGVLVVIFGGVAAWNGYHYWQNQQAGQAAALSDAVQVAVQGGDAARATQAFDD LKSRYGGTVQAAQAGLLAAKAMVDSGNPDGAKPILQWLADNASDDGYKAIASLRLSSLLIDQKAYDEALSRLSGKFPPQF DPMIADRKGDVLALQGKKAEAIAEYQKAYKGLEDGTEYRRVVEVKLGSLGVQARADGEAAK
Sequences:
>Translated_221_residues MAKHLDLEEQEQLDQLKHFWNAWGTLISGVLVVIFGGVAAWNGYHYWQNQQAGQAAALSDAVQVAVQGGDAARATQAFDD LKSRYGGTVQAAQAGLLAAKAMVDSGNPDGAKPILQWLADNASDDGYKAIASLRLSSLLIDQKAYDEALSRLSGKFPPQF DPMIADRKGDVLALQGKKAEAIAEYQKAYKGLEDGTEYRRVVEVKLGSLGVQARADGEAAK >Mature_220_residues AKHLDLEEQEQLDQLKHFWNAWGTLISGVLVVIFGGVAAWNGYHYWQNQQAGQAAALSDAVQVAVQGGDAARATQAFDDL KSRYGGTVQAAQAGLLAAKAMVDSGNPDGAKPILQWLADNASDDGYKAIASLRLSSLLIDQKAYDEALSRLSGKFPPQFD PMIADRKGDVLALQGKKAEAIAEYQKAYKGLEDGTEYRRVVEVKLGSLGVQARADGEAAK
Specific function: Unknown
COG id: COG2976
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TPR repeat [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018704 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF09976 DUF2133 [H]
EC number: NA
Molecular weight: Translated: 23723; Mature: 23592
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHLDLEEQEQLDQLKHFWNAWGTLISGVLVVIFGGVAAWNGYHYWQNQQAGQAAALSD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH AVQVAVQGGDAARATQAFDDLKSRYGGTVQAAQAGLLAAKAMVDSGNPDGAKPILQWLAD HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC NASDDGYKAIASLRLSSLLIDQKAYDEALSRLSGKFPPQFDPMIADRKGDVLALQGKKAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHH AIAEYQKAYKGLEDGTEYRRVVEVKLGSLGVQARADGEAAK HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCC >Mature Secondary Structure AKHLDLEEQEQLDQLKHFWNAWGTLISGVLVVIFGGVAAWNGYHYWQNQQAGQAAALSD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH AVQVAVQGGDAARATQAFDDLKSRYGGTVQAAQAGLLAAKAMVDSGNPDGAKPILQWLAD HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC NASDDGYKAIASLRLSSLLIDQKAYDEALSRLSGKFPPQFDPMIADRKGDVLALQGKKAE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHH AIAEYQKAYKGLEDGTEYRRVVEVKLGSLGVQARADGEAAK HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10655208 [H]