Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is mdlA [H]
Identifier: 120610084
GI number: 120610084
Start: 1530593
End: 1531762
Strand: Direct
Name: mdlA [H]
Synonym: Aave_1397
Alternate gene names: 120610084
Gene position: 1530593-1531762 (Clockwise)
Preceding gene: 120610083
Following gene: 120610088
Centisome position: 28.59
GC content: 65.38
Gene sequence:
>1170_bases ATGCGAATCGTCAACATCCTCGAATCCACGCGCCCCATCAAGTCCGACATCCGCAACGCCTACATCGACTTCTCGAAGAT GACGCTCAGCCTCGTGGCCGTCGTCACCGACGTCATCCGCGATGGCCAACCCGTGATCGGCTACGGTTTCAACTCCAATG GCCGCTACGGCCAGGGCGCGCTCATGCGCGACCGCTTCATCCCGCGCGTGCTGGAGGCCGACCCCGCCTCCCTGGTCGAT GACACCGGCGACAACTTGTGCCCCCACAAGGTCTGGGCGCGCATGATGACCAACGAAAAACCTGGCGGCCATGGCGAGCG CTCCGTCGCCGTCGGCACCATCGACATGGCCGTGTGGGACGCCGTGGCGAAAATAGCCAACAAGCCCCTCTACCAGTTGC TCGCCGAGCGCTACGGCAACGGCACGCCCGCCAACCCGCGTGTGTTCGTGTACGCGGCCGGCGGCTACTACTACCCCGGC AAGGGCCTGGACGGCTTGAAGCAAGAGATGGAGAGCTACCTCGCGCGCGGCTACTCCGTCGTCAAGATGAAGATCGGCGG CGCGTCGCTCGCCGACGACTGCGAGCGCATCGAATCTGTCCTGAAAATCCTCGGCCCCGGCCAGCAGCTCGCCGTGGACG CCAACGGCCGCTTCGACCTGCAAACCGCCATCGACTATGGCAAGGCGCTCTCGCAATACCCCCTGTTCTGGTACGAAGAG GCCGGCGATCCGCTCGACTACGAACTGCAGGCCAAGCTCGGCGAGGTGTACCAGGGCCCCATGGCCACGGGCGAAAACCT GTTCTCCATGCAGGACGCCCGCAACCTCATCCGCCACGGTGGCATGCGCCCCGACCGCGACTGGCTGCAGTTCGACTGCG CCCTCAGCTACGGCCTCGTCGAATACCTGCGCACGCTCGACATGCTGAAAGACAACGGCTGGTCCCCCAGCCGCTGCATC CCCCACGGCGGCCACCAGATGTCATTGGCCATCGCCGCCGGCCTGGGCCTGGGCGGCAACGAGAGCTACCCGGACCTGTT CCAGCCGTATGGCGGGTTCCCGGACGGGGTGAAGGTGGAGAACGGGTATGTGACGCTGCCGGCGTTGCCGGGGATTGGGT TTGAGGGGAAGTCGGACTTGATTGCGGAGATGCGGGCGTTGGCGAGTTGA
Upstream 100 bases:
>100_bases GGGCAGGACATCGCCATCTGCGGCGGCTCCTCGCTCGCCCGCTGAACCGCTCCCTTCATCCATCCCGTTTCATCTCACAC GGCCCGCGCCTTTGACCACC
Downstream 100 bases:
>100_bases TGGAGGAAGGTGCTGGCGCTCGGCACGTGGTGTGTTGTTGCCCTTGGTTCCAAGTCGGTGCTGACACGCGGTTGACGCGT ATAAATGACTGCTGACGCGT
Product: mandelate racemase/muconate lactonizing protein
Products: NA
Alternate protein names: MR [H]
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MRIVNILESTRPIKSDIRNAYIDFSKMTLSLVAVVTDVIRDGQPVIGYGFNSNGRYGQGALMRDRFIPRVLEADPASLVD DTGDNLCPHKVWARMMTNEKPGGHGERSVAVGTIDMAVWDAVAKIANKPLYQLLAERYGNGTPANPRVFVYAAGGYYYPG KGLDGLKQEMESYLARGYSVVKMKIGGASLADDCERIESVLKILGPGQQLAVDANGRFDLQTAIDYGKALSQYPLFWYEE AGDPLDYELQAKLGEVYQGPMATGENLFSMQDARNLIRHGGMRPDRDWLQFDCALSYGLVEYLRTLDMLKDNGWSPSRCI PHGGHQMSLAIAAGLGLGGNESYPDLFQPYGGFPDGVKVENGYVTLPALPGIGFEGKSDLIAEMRALAS
Sequences:
>Translated_389_residues MRIVNILESTRPIKSDIRNAYIDFSKMTLSLVAVVTDVIRDGQPVIGYGFNSNGRYGQGALMRDRFIPRVLEADPASLVD DTGDNLCPHKVWARMMTNEKPGGHGERSVAVGTIDMAVWDAVAKIANKPLYQLLAERYGNGTPANPRVFVYAAGGYYYPG KGLDGLKQEMESYLARGYSVVKMKIGGASLADDCERIESVLKILGPGQQLAVDANGRFDLQTAIDYGKALSQYPLFWYEE AGDPLDYELQAKLGEVYQGPMATGENLFSMQDARNLIRHGGMRPDRDWLQFDCALSYGLVEYLRTLDMLKDNGWSPSRCI PHGGHQMSLAIAAGLGLGGNESYPDLFQPYGGFPDGVKVENGYVTLPALPGIGFEGKSDLIAEMRALAS >Mature_389_residues MRIVNILESTRPIKSDIRNAYIDFSKMTLSLVAVVTDVIRDGQPVIGYGFNSNGRYGQGALMRDRFIPRVLEADPASLVD DTGDNLCPHKVWARMMTNEKPGGHGERSVAVGTIDMAVWDAVAKIANKPLYQLLAERYGNGTPANPRVFVYAAGGYYYPG KGLDGLKQEMESYLARGYSVVKMKIGGASLADDCERIESVLKILGPGQQLAVDANGRFDLQTAIDYGKALSQYPLFWYEE AGDPLDYELQAKLGEVYQGPMATGENLFSMQDARNLIRHGGMRPDRDWLQFDCALSYGLVEYLRTLDMLKDNGWSPSRCI PHGGHQMSLAIAAGLGLGGNESYPDLFQPYGGFPDGVKVENGYVTLPALPGIGFEGKSDLIAEMRALAS
Specific function: D-galactonate degradation; first step. D-galactonate degradation; third step. [C]
COG id: COG4948
COG function: function code MR; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018110 - InterPro: IPR015654 - InterPro: IPR013342 - InterPro: IPR013341 - InterPro: IPR001354 [H]
Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]
EC number: =5.1.2.2 [H]
Molecular weight: Translated: 42572; Mature: 42572
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIVNILESTRPIKSDIRNAYIDFSKMTLSLVAVVTDVIRDGQPVIGYGFNSNGRYGQGA CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC LMRDRFIPRVLEADPASLVDDTGDNLCPHKVWARMMTNEKPGGHGERSVAVGTIDMAVWD HHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH AVAKIANKPLYQLLAERYGNGTPANPRVFVYAAGGYYYPGKGLDGLKQEMESYLARGYSV HHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHHHHHHHHHHHHCCEEE VKMKIGGASLADDCERIESVLKILGPGQQLAVDANGRFDLQTAIDYGKALSQYPLFWYEE EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCEEEEC AGDPLDYELQAKLGEVYQGPMATGENLFSMQDARNLIRHGGMRPDRDWLQFDCALSYGLV CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH EYLRTLDMLKDNGWSPSRCIPHGGHQMSLAIAAGLGLGGNESYPDLFQPYGGFPDGVKVE HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEC NGYVTLPALPGIGFEGKSDLIAEMRALAS CCEEEECCCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MRIVNILESTRPIKSDIRNAYIDFSKMTLSLVAVVTDVIRDGQPVIGYGFNSNGRYGQGA CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC LMRDRFIPRVLEADPASLVDDTGDNLCPHKVWARMMTNEKPGGHGERSVAVGTIDMAVWD HHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH AVAKIANKPLYQLLAERYGNGTPANPRVFVYAAGGYYYPGKGLDGLKQEMESYLARGYSV HHHHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCEECCCCCHHHHHHHHHHHHHCCEEE VKMKIGGASLADDCERIESVLKILGPGQQLAVDANGRFDLQTAIDYGKALSQYPLFWYEE EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCEEEEC AGDPLDYELQAKLGEVYQGPMATGENLFSMQDARNLIRHGGMRPDRDWLQFDCALSYGLV CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH EYLRTLDMLKDNGWSPSRCIPHGGHQMSLAIAAGLGLGGNESYPDLFQPYGGFPDGVKVE HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEEC NGYVTLPALPGIGFEGKSDLIAEMRALAS CCEEEECCCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2831968; 2271624; 2215699; 1909893; 1892834; 7893689; 7893690 [H]