Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is qseD [H]

Identifier: 120610079

GI number: 120610079

Start: 1525429

End: 1526409

Strand: Reverse

Name: qseD [H]

Synonym: Aave_1392

Alternate gene names: 120610079

Gene position: 1526409-1525429 (Counterclockwise)

Preceding gene: 120610081

Following gene: 120610077

Centisome position: 28.52

GC content: 74.82

Gene sequence:

>981_bases
ATGGGCCCCGGCAACCGACCGCTGGATCTGGAGTGGCTGGAGGATTTCCTCGCCCTCGCCGAGAGCGGCAATTTCTCGCG
CGCGGCCGAGGCCCGCGCCATCGCGCAGCCGGCATTCAGCCGCCACATCCGCGCGCTGGAGGACTGGGTGGGCGCCGAGC
TGTTCGACCGCAGCGCGCACCCGGCCACCCTCACGGCGGCGGGGCAGCGCTTCCAGCCCCTGCTGGAAGACGTGCTTGCG
CGGCTGGAGGCGGCGCGGATCAAGGCCTGCGCGGCGCAGGCCCAGGCGGCGGCCAGCCTGCGCTTCGCGGCGACGCACGT
GCTCTCGCTCACCTTCTTCCCGCGATGGCTAGGGGGCCTGGAGTCGCAGCTGCGGCTGGGGCCGATCCAGACGATTTCCG
ACAGCTACCAGGCCTGCGAGGACCTGGCCATGCAGCGGCGCGTGCAGTTCGTGCTGTGCCACGGCCATGCGGCCGTGCCG
GGACGGCTGGACGAGGCGGGCTACCCGGCGGCGCGCCTGGCGGACGACGTGCTGCAGCCCGTGTCGGCGCCGCAGGGGGA
CGGCACGCCGCTGCATGCGATACCGGGCCCGGAATCGCAGGGCGGCGCGCGGCCGCCGCTGCCGGTGCTGGCGTACAGCG
ATGCCTCGGGCCTGGGGCGCATCATGCGCGCGCTGCGCAAGGGGGTGTTCGACGCGGGGGGCGTGGCCGGCATGCCGGGC
GAGGTGGAGGTGGTGTTTACCGCCCACCATGCGGCGCTGCTCAAGGCGATGGCGCTCGAAGGCCGCGGCATGGCCTGGCT
GCCGCGCAGCCTGATCGCGGAGGAACTGCAATCAGGCGCGCTGGTGGCCGCCGGGCCGGCCGGCTGGGACGTGCCGGTGG
AGATCCGGCTGTACCGGCAGCGCACGGAGATGTCGGACGCGGCGGAGACGCTCTGGCGCCTCGCCGCGGGCGGGCAGGCC
GCAGGCGGCGCCCTGCCCTGA

Upstream 100 bases:

>100_bases
AGAAGGGGAGCGCAGCGGATGATTCCCGCCCCGCCCGCGGCCGTCCAATACCCGAATCGCATACAACTATCCGCGCGTGC
CGCCACGCGCCAGGAGACGC

Downstream 100 bases:

>100_bases
CACGCGCCGCCTGGCGGCGGGCGGTCAGTCCTTGTGGAAGCGCGTGCCCTGGCCGATGGTGCAGCGGTAGGCCACGGACG
GCGTGCGCAGGTCGTAGCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MGPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAHPATLTAAGQRFQPLLEDVLA
RLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGLESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVP
GRLDEAGYPAARLADDVLQPVSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG
EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQRTEMSDAAETLWRLAAGGQA
AGGALP

Sequences:

>Translated_326_residues
MGPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAHPATLTAAGQRFQPLLEDVLA
RLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGLESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVP
GRLDEAGYPAARLADDVLQPVSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG
EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQRTEMSDAAETLWRLAAGGQA
AGGALP
>Mature_325_residues
GPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAHPATLTAAGQRFQPLLEDVLAR
LEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGLESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVPG
RLDEAGYPAARLADDVLQPVSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPGE
VEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQRTEMSDAAETLWRLAAGGQAA
GGALP

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=307, Percent_Identity=32.2475570032573, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34525; Mature: 34394

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAH
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PATLTAAGQRFQPLLEDVLARLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGL
CCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
ESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVPGRLDEAGYPAARLADDVLQP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
VSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG
CCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQ
CEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHH
RTEMSDAAETLWRLAAGGQAAGGALP
HHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GPGNRPLDLEWLEDFLALAESGNFSRAAEARAIAQPAFSRHIRALEDWVGAELFDRSAH
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PATLTAAGQRFQPLLEDVLARLEAARIKACAAQAQAAASLRFAATHVLSLTFFPRWLGGL
CCEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
ESQLRLGPIQTISDSYQACEDLAMQRRVQFVLCHGHAAVPGRLDEAGYPAARLADDVLQP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
VSAPQGDGTPLHAIPGPESQGGARPPLPVLAYSDASGLGRIMRALRKGVFDAGGVAGMPG
CCCCCCCCCEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
EVEVVFTAHHAALLKAMALEGRGMAWLPRSLIAEELQSGALVAAGPAGWDVPVEIRLYRQ
CEEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHH
RTEMSDAAETLWRLAAGGQAAGGALP
HHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]