Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
Click here to switch to the map view.
The map label for this gene is piv [H]
Identifier: 120610081
GI number: 120610081
Start: 1527598
End: 1528548
Strand: Reverse
Name: piv [H]
Synonym: Aave_1394
Alternate gene names: 120610081
Gene position: 1528548-1527598 (Counterclockwise)
Preceding gene: 120610085
Following gene: 120610079
Centisome position: 28.56
GC content: 66.77
Gene sequence:
>951_bases ATGAGTGAACTCGTCTACGTGGGCATCGATATCGCCAAGAACAGCTTCGAAGTGGCTGTCACGGGCGAACTGCAGACGCT CAATCTGGCCAACGACGAAGCCGGCCATGCCCAGCTGTGCCAATGCCTCGCACCGCTGGCGCCCAGGCTCATCCTGATGG AGGCCACCGGCGGCTATGAGCAAGACCTCGCGCTGGCCTTGGCGGGCGCGGGCTTGCGCGTGTCGGTGGTCAACCCTCGC CAGGCACGCGACTTCGCGCGCTGCGTGGGCAAGCTGGCCAAGACCGACCGCATCGACGCGCAAGCTCTGCGCAGCTTTGC CTCGATGCTCGATGCGCAAGGCCACCAGCCTCGTGCCCTGGCCGACGACGAGCGCCGCGAGCTCACGGCCCTGGTGGTGC GCCGCAGGCAACTGCTGACCATGCTGGTGTCCGAGCGCCAGCGCCTGGGCGTGGCCCACCGCAAGGCCAAGCCCAGCATC CTGGCGATCATGGATGCCATCGCGGCGCAATTGCACGATGTCGATGACGAGCTCAAGGCGCATGTCCAGACTCACCACGC CGACCTGGCCAAACTGCTGACCTCGGTCAAGGGCGTGGGGCCGACGACCGCCTGCACGCTGCTGGCGCAACTTCCCGAAC TCGGCCAGCTCAATCGCAAGCAGATCACGGCCCTGGTCGGTCTGGCGCCCATGAACCGCGACTCGGGCACGCTCAGGGGC CAGCGCCACATCTTCGGTGGCCGCGCCGACGTGCGGCGCGTGCTCTACGTCGCAGCCTTGGTCGGCACGCGCTTCAACCC CGTCCTCAAGGCGTTCTACGCCAAGCTGCTGGCCGCGGGCAAAGCCAAGAAGGTCGCCCTCGTGGCCTGCATGCACAAGC TGCTGGTCATCCTGAACGCGATCGCTCGCACCAGGTCGCCCTGGCGCGATGACTTTGCTGAGCGTCTTTGA
Upstream 100 bases:
>100_bases CAGCCCAGGGCGCACGGTGGTGGTCCCTTTGTTCTGCCGCATCCCGAATGGTTGACCGAACACATTTCGTATTCGTAAGG CTGGGAGTTGGAGAACCGCT
Downstream 100 bases:
>100_bases GCTAGTCATTCAAGATGGTTGCTGTCGTTGTTTCTTGTGAGGCCACCGGTAGAACAACGGACTTTTCATCCGCTGCCCTT GTGCTGGAGCTGCTGTTGTT
Product: transposase IS116/IS110/IS902 family protein
Products: NA
Alternate protein names: PIVML [H]
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MSELVYVGIDIAKNSFEVAVTGELQTLNLANDEAGHAQLCQCLAPLAPRLILMEATGGYEQDLALALAGAGLRVSVVNPR QARDFARCVGKLAKTDRIDAQALRSFASMLDAQGHQPRALADDERRELTALVVRRRQLLTMLVSERQRLGVAHRKAKPSI LAIMDAIAAQLHDVDDELKAHVQTHHADLAKLLTSVKGVGPTTACTLLAQLPELGQLNRKQITALVGLAPMNRDSGTLRG QRHIFGGRADVRRVLYVAALVGTRFNPVLKAFYAKLLAAGKAKKVALVACMHKLLVILNAIARTRSPWRDDFAERL
Sequences:
>Translated_316_residues MSELVYVGIDIAKNSFEVAVTGELQTLNLANDEAGHAQLCQCLAPLAPRLILMEATGGYEQDLALALAGAGLRVSVVNPR QARDFARCVGKLAKTDRIDAQALRSFASMLDAQGHQPRALADDERRELTALVVRRRQLLTMLVSERQRLGVAHRKAKPSI LAIMDAIAAQLHDVDDELKAHVQTHHADLAKLLTSVKGVGPTTACTLLAQLPELGQLNRKQITALVGLAPMNRDSGTLRG QRHIFGGRADVRRVLYVAALVGTRFNPVLKAFYAKLLAAGKAKKVALVACMHKLLVILNAIARTRSPWRDDFAERL >Mature_315_residues SELVYVGIDIAKNSFEVAVTGELQTLNLANDEAGHAQLCQCLAPLAPRLILMEATGGYEQDLALALAGAGLRVSVVNPRQ ARDFARCVGKLAKTDRIDAQALRSFASMLDAQGHQPRALADDERRELTALVVRRRQLLTMLVSERQRLGVAHRKAKPSIL AIMDAIAAQLHDVDDELKAHVQTHHADLAKLLTSVKGVGPTTACTLLAQLPELGQLNRKQITALVGLAPMNRDSGTLRGQ RHIFGGRADVRRVLYVAALVGTRFNPVLKAFYAKLLAAGKAKKVALVACMHKLLVILNAIARTRSPWRDDFAERL
Specific function: May be the site-specific invertase required for pilin gene inversion. Moraxella can express either a Q or I pilin; the inversion of 2 kb of DNA determines which pilin is expressed [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 34389; Mature: 34257
Theoretical pI: Translated: 10.39; Mature: 10.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELVYVGIDIAKNSFEVAVTGELQTLNLANDEAGHAQLCQCLAPLAPRLILMEATGGYE CCCEEEEEEEEECCCEEEEEECCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEECCCCCH QDLALALAGAGLRVSVVNPRQARDFARCVGKLAKTDRIDAQALRSFASMLDAQGHQPRAL HHHHHHEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC ADDERRELTALVVRRRQLLTMLVSERQRLGVAHRKAKPSILAIMDAIAAQLHDVDDELKA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH HVQTHHADLAKLLTSVKGVGPTTACTLLAQLPELGQLNRKQITALVGLAPMNRDSGTLRG HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCCCCC QRHIFGGRADVRRVLYVAALVGTRFNPVLKAFYAKLLAAGKAKKVALVACMHKLLVILNA CHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IARTRSPWRDDFAERL HHHCCCCHHHHHHHCC >Mature Secondary Structure SELVYVGIDIAKNSFEVAVTGELQTLNLANDEAGHAQLCQCLAPLAPRLILMEATGGYE CCEEEEEEEEECCCEEEEEECCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEECCCCCH QDLALALAGAGLRVSVVNPRQARDFARCVGKLAKTDRIDAQALRSFASMLDAQGHQPRAL HHHHHHEECCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC ADDERRELTALVVRRRQLLTMLVSERQRLGVAHRKAKPSILAIMDAIAAQLHDVDDELKA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH HVQTHHADLAKLLTSVKGVGPTTACTLLAQLPELGQLNRKQITALVGLAPMNRDSGTLRG HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHCCCCHHHHHHHHHCCCCCCCCCCCCC QRHIFGGRADVRRVLYVAALVGTRFNPVLKAFYAKLLAAGKAKKVALVACMHKLLVILNA CHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH IARTRSPWRDDFAERL HHHCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2403542 [H]