Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
---|---|
Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ahpC [H]
Identifier: 120610062
GI number: 120610062
Start: 1506774
End: 1507349
Strand: Direct
Name: ahpC [H]
Synonym: Aave_1375
Alternate gene names: 120610062
Gene position: 1506774-1507349 (Clockwise)
Preceding gene: 120610060
Following gene: 120610063
Centisome position: 28.15
GC content: 61.98
Gene sequence:
>576_bases ATGTCCCTGATCAATACCCAAGTCCAGCCTTTTAAGACCGAAGCGTTCGTGAACCGCAATGGCAAGGGTGAGTTCATTAC CGTCACGGAAGAGAACCTGAAGGGCAAGTGGTCCGTGCTGATCTTCATGCCGGCCGCCTTCACGTTCAACTGCCCGACCG AGATCGAAGACGCCGCCGACAACTACGCCGAGTTCCAGAAGGCCGGTGCCGAGGTGTACATCGTGACCACCGACACGCAC TTCTCGCACAAGGTGTGGCACGAGACCTCCGACGCCGTCGGCAAGGCCAAGTTCCCCCTGGTCGGCGACCCGACCCACCA GCTGACCAACGCCTTCGGCGTGCACATCCCCGAAGAAGGCCTGGCACTGCGCGGCACCTTCGTGATCAACCCCGACGGCG TCATCAAGACGATGGAAATCCACTCCAACGAGATCGCCCGCGACGTGTCGGAAACCCTGCGCAAGCTCAAGGCCGCCCAG TTCACCGCCGCCAACCCCGGCCAGGTGTGCCCCGCCAAGTGGAAGGAAGGCGCCAAGACCCTGACGCCTTCGCTGGACCT GGTCGGCAAGATCTAA
Upstream 100 bases:
>100_bases AATGCAATCGATTGGATGGAATCAATTAATTGGATTGATTGGGTGAGCGCCCCTAAACTTCGTCTTGTCATTCAGCAACC CACCAACCGAGGAAACAGCA
Downstream 100 bases:
>100_bases TCGCCCGCGCGATCCGGAAGCGCCCTGTGCGCTTCCCCGGCCGGACCTTCGCATGGCGCCCGCGCGCCGTGCCGTCCGGC TTTTTTTCGCCCGCTTTTCG
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Alkyl hydroperoxide reductase protein C22; Peroxiredoxin; SCRP-23; Sulfate starvation-induced protein 8; SSI8; Thioredoxin peroxidase [H]
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MSLINTQVQPFKTEAFVNRNGKGEFITVTEENLKGKWSVLIFMPAAFTFNCPTEIEDAADNYAEFQKAGAEVYIVTTDTH FSHKVWHETSDAVGKAKFPLVGDPTHQLTNAFGVHIPEEGLALRGTFVINPDGVIKTMEIHSNEIARDVSETLRKLKAAQ FTAANPGQVCPAKWKEGAKTLTPSLDLVGKI
Sequences:
>Translated_191_residues MSLINTQVQPFKTEAFVNRNGKGEFITVTEENLKGKWSVLIFMPAAFTFNCPTEIEDAADNYAEFQKAGAEVYIVTTDTH FSHKVWHETSDAVGKAKFPLVGDPTHQLTNAFGVHIPEEGLALRGTFVINPDGVIKTMEIHSNEIARDVSETLRKLKAAQ FTAANPGQVCPAKWKEGAKTLTPSLDLVGKI >Mature_190_residues SLINTQVQPFKTEAFVNRNGKGEFITVTEENLKGKWSVLIFMPAAFTFNCPTEIEDAADNYAEFQKAGAEVYIVTTDTHF SHKVWHETSDAVGKAKFPLVGDPTHQLTNAFGVHIPEEGLALRGTFVINPDGVIKTMEIHSNEIARDVSETLRKLKAAQF TAANPGQVCPAKWKEGAKTLTPSLDLVGKI
Specific function: Directly reduces organic hydroperoxides in its reduced dithiol form [H]
COG id: COG0450
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI32483377, Length=183, Percent_Identity=40.9836065573771, Blast_Score=139, Evalue=1e-33, Organism=Homo sapiens, GI5802974, Length=183, Percent_Identity=42.0765027322404, Blast_Score=138, Evalue=3e-33, Organism=Homo sapiens, GI32189392, Length=179, Percent_Identity=38.5474860335196, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI4505591, Length=166, Percent_Identity=37.3493975903614, Blast_Score=128, Evalue=2e-30, Organism=Homo sapiens, GI32455266, Length=166, Percent_Identity=37.3493975903614, Blast_Score=128, Evalue=2e-30, Organism=Homo sapiens, GI32455264, Length=166, Percent_Identity=37.3493975903614, Blast_Score=128, Evalue=2e-30, Organism=Homo sapiens, GI5453549, Length=172, Percent_Identity=37.2093023255814, Blast_Score=128, Evalue=3e-30, Organism=Escherichia coli, GI1786822, Length=191, Percent_Identity=56.5445026178011, Blast_Score=237, Evalue=4e-64, Organism=Caenorhabditis elegans, GI17554494, Length=181, Percent_Identity=39.7790055248619, Blast_Score=138, Evalue=2e-33, Organism=Caenorhabditis elegans, GI32565831, Length=178, Percent_Identity=38.2022471910112, Blast_Score=129, Evalue=9e-31, Organism=Caenorhabditis elegans, GI193204376, Length=178, Percent_Identity=38.2022471910112, Blast_Score=129, Evalue=9e-31, Organism=Saccharomyces cerevisiae, GI6320661, Length=185, Percent_Identity=38.3783783783784, Blast_Score=134, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6323613, Length=186, Percent_Identity=38.7096774193548, Blast_Score=130, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6319407, Length=164, Percent_Identity=28.0487804878049, Blast_Score=65, Evalue=8e-12, Organism=Drosophila melanogaster, GI24656348, Length=186, Percent_Identity=37.6344086021505, Blast_Score=136, Evalue=1e-32, Organism=Drosophila melanogaster, GI17864676, Length=186, Percent_Identity=37.6344086021505, Blast_Score=136, Evalue=1e-32, Organism=Drosophila melanogaster, GI17738015, Length=167, Percent_Identity=38.3233532934132, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI21357347, Length=186, Percent_Identity=35.4838709677419, Blast_Score=126, Evalue=9e-30, Organism=Drosophila melanogaster, GI17157991, Length=162, Percent_Identity=37.037037037037, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI24641739, Length=162, Percent_Identity=37.037037037037, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI24581278, Length=158, Percent_Identity=29.746835443038, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI17975518, Length=156, Percent_Identity=29.4871794871795, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24652434, Length=156, Percent_Identity=29.4871794871795, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI24652436, Length=156, Percent_Identity=29.4871794871795, Blast_Score=70, Evalue=8e-13,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2250 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 6040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1580 Molecules/Cell In: Stationary-Phase
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017559 - InterPro: IPR019479 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF10417 1-cysPrx_C; PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 20989; Mature: 20858
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLINTQVQPFKTEAFVNRNGKGEFITVTEENLKGKWSVLIFMPAAFTFNCPTEIEDAAD CCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEECCEEEECCCCCHHHHHH NYAEFQKAGAEVYIVTTDTHFSHKVWHETSDAVGKAKFPLVGDPTHQLTNAFGVHIPEEG HHHHHHHCCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCEECCCC LALRGTFVINPDGVIKTMEIHSNEIARDVSETLRKLKAAQFTAANPGQVCPAKWKEGAKT EEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC LTPSLDLVGKI CCCCCCEEECC >Mature Secondary Structure SLINTQVQPFKTEAFVNRNGKGEFITVTEENLKGKWSVLIFMPAAFTFNCPTEIEDAAD CCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEECCEEEECCCCCHHHHHH NYAEFQKAGAEVYIVTTDTHFSHKVWHETSDAVGKAKFPLVGDPTHQLTNAFGVHIPEEG HHHHHHHCCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCEECCCC LALRGTFVINPDGVIKTMEIHSNEIARDVSETLRKLKAAQFTAANPGQVCPAKWKEGAKT EEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCC LTPSLDLVGKI CCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]