Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ahpF [H]
Identifier: 120610063
GI number: 120610063
Start: 1507503
End: 1509071
Strand: Direct
Name: ahpF [H]
Synonym: Aave_1376
Alternate gene names: 120610063
Gene position: 1507503-1509071 (Clockwise)
Preceding gene: 120610062
Following gene: 120610064
Centisome position: 28.16
GC content: 68.77
Gene sequence:
>1569_bases ATGCTCGACGACCAACTCAAATCCCAACTTTCCGCCTATCTGGAGCGCGTGACGCAGTCGTTCGAGATCGTGGCGTCGCT GGACGGCAGCGACACCTCGGCCCAGATGCGCGACCTGCTGGAGACCATCCAGTCCCTGCGCAGCGACAGGATCAGCCTGC GCACCGACGGCACCGACGCCCGCAAGCCGTCCTTCACGCTGCAGCGCGCCGGCACGCAGACGAGCCTGCGCTTCGCCGGC CTGCCCCTCGGCCATGAATTCACCTCGCTCGTGCTGGCGCTGCTCTGGACGGGCGGCCACCCGCCGAAGGTGGAGCAGGA CGTGATCGAGCAGGTGCAGGCGCTCGACGGCGACTTCGATTTCGAGGTGTACATGAGCCTGACCTGCCACAACTGCCCGG ACGTGGTGCAGGCGCTGTCGCTCATGGCGATCCTCAACCCCCGCATCCGCACCACCGTGATCGAGGGCGGCGCGTTCCAG CAGGAAGTGACCGACCGCGAGATCATGGCCGTGCCCATGGTCTTCCTCAACGGCCAGGTGTTCGGCTCCGGCCGCATGAC CATCGAGGAAATCGTCGGCAAGCTCGACACCGGCGCCGCGAAGCGCGAAGCCGCCAAACTGTCCGCCAAGGAAGCGTTCG ACGTGCTGATCGTCGGCGGTGGTCCGGCCGGCGCCGCGGCGGCCGTCTATGCCGCCCGCAAGGGCATCCGCATCGGCGTG GCGGCCGAGCGCTTCGGCGGCCAGGTGAACGACACGCTGGACATCGAGAACTACATCTCGGTCAGCAAGACCGATGGCCC CAAGTTCGCCGCCGCGCTGGAGCAGCACGTGCGCGACTACGAGGTGGACCTGATGAACCTGCAGCGTGCCCGCGCGCTCA AGCCCGCCGCCACCGAGGGCGGCCTGATCGAGGTCGAGCTCGAGAACGGCGGCACGCTCTCGTCCCGCACCGTGATCATT TCCACCGGCGCGCGCTGGCGCAACATGAACGTGCCGGGCGAGGAGCAGTACCGCACCAAGGGCGTGACCTACTGCCCGCA CTGCGACGGCCCGCTCTTCAAGGGCAAGCGCGTGGCGGTGATCGGCGGCGGCAACTCCGGCGTGGAGGCCGCGATCGACC TGGCCGGCGTGGTGGCCCACGTCACCGTGCTGGAGTTCGCGGGCGAGCTGAAGGCCGACGCGGTGCTGCAGCGCAAGCTG CGCAGCCTGCCGAACGTGGACGTGATCCTCAACGCGCAGACCACCGAGGTGAAGGGCGACGGCACCCGGGTGACCGGCCT GAGCTACAAGGACCGCACGAACGACGAGCACCATGTGCTCGCCCTGGAAGGCATCTTCGTGCAGATCGGCCTGCTGCCCA ACACCGACTGGCTCAAGGGCACGGTGGACCTGTCGCGGTTCGGCGAGATCGTGGTGGACTCCCATGGCCGCACCAGCGTG CCGGGCGTGTTCGCGGCCGGCGACTGCACCACGGTGCCCTACAAGCAGATCATCATCGCGGCCGGCGAGGGCGCGAAGGC GGCGCTGGGCGCGTTCGACCACCTGATCCGCACGACGGCCCCGGCCTGA
Upstream 100 bases:
>100_bases TGGCGCCCGCGCGCCGTGCCGTCCGGCTTTTTTTCGCCCGCTTTTCGCTCGTTCCCGGCCTCCGGCACCCTGCATGACTC GAAACCACTGAAGGACTCCC
Downstream 100 bases:
>100_bases CGCGGCCACCCACCCCACGAAAAAGGGAGCAGCATGGCTGCTCCCTTTGCTTTTGGGGCCCGGCATCCGGCGATGGCCGG CACGTTGCGGCGGGCCACGC
Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Products: an alcohol; H2O; NAD [C]
Alternate protein names: NA
Number of amino acids: Translated: 522; Mature: 522
Protein sequence:
>522_residues MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDARKPSFTLQRAGTQTSLRFAG LPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFDFEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQ QEVTDREIMAVPMVFLNGQVFGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEGGLIEVELENGGTLSSRTVII STGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKL RSLPNVDVILNAQTTEVKGDGTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA
Sequences:
>Translated_522_residues MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDARKPSFTLQRAGTQTSLRFAG LPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFDFEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQ QEVTDREIMAVPMVFLNGQVFGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEGGLIEVELENGGTLSSRTVII STGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKL RSLPNVDVILNAQTTEVKGDGTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA >Mature_522_residues MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDARKPSFTLQRAGTQTSLRFAG LPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFDFEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQ QEVTDREIMAVPMVFLNGQVFGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEGGLIEVELENGGTLSSRTVII STGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKL RSLPNVDVILNAQTTEVKGDGTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA
Specific function: Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AhpC protein [H]
COG id: COG3634
COG function: function code O; Alkyl hydroperoxide reductase, large subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081763, Length=519, Percent_Identity=65.5105973025048, Blast_Score=705, Evalue=0.0, Organism=Escherichia coli, GI1787114, Length=319, Percent_Identity=35.1097178683386, Blast_Score=160, Evalue=2e-40, Organism=Saccharomyces cerevisiae, GI6321898, Length=341, Percent_Identity=32.258064516129, Blast_Score=159, Evalue=1e-39, Organism=Saccharomyces cerevisiae, GI6320560, Length=328, Percent_Identity=33.8414634146341, Blast_Score=149, Evalue=9e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012081 - InterPro: IPR013027 - InterPro: IPR002109 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: 1.6.4.- [C]
Molecular weight: Translated: 55957; Mature: 55957
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00573 PYRIDINE_REDOX_2 ; PS00697 DNA_LIGASE_A1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDA CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC RKPSFTLQRAGTQTSLRFAGLPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFD CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC FEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQQEVTDREIMAVPMVFLNGQV EEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCHHEEEEEEEECCEE FGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV ECCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEG EHHHHCCCCCCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GLIEVELENGGTLSSRTVIISTGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAV CEEEEEECCCCCCCCCEEEEECCCCEECCCCCCHHHHHHCCCEECCCCCCCCCCCCEEEE IGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKLRSLPNVDVILNAQTTEVKGD EECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCEEEECCC GTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV CCEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEECHHHCCCEEEECCCCCCC PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA CCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDA CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC RKPSFTLQRAGTQTSLRFAGLPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFD CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC FEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQQEVTDREIMAVPMVFLNGQV EEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCHHEEEEEEEECCEE FGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV ECCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEG EHHHHCCCCCCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GLIEVELENGGTLSSRTVIISTGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAV CEEEEEECCCCCCCCCEEEEECCCCEECCCCCCHHHHHHCCCEECCCCCCCCCCCCEEEE IGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKLRSLPNVDVILNAQTTEVKGD EECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCEEEECCC GTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV CCEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEECHHHCCCEEEECCCCCCC PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA CCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: FAD. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ROOH; Proton; NADH [C]
Specific reaction: ROOH + Proton + NADH = an alcohol + H2O + NAD [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]