Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is ahpF [H]

Identifier: 120610063

GI number: 120610063

Start: 1507503

End: 1509071

Strand: Direct

Name: ahpF [H]

Synonym: Aave_1376

Alternate gene names: 120610063

Gene position: 1507503-1509071 (Clockwise)

Preceding gene: 120610062

Following gene: 120610064

Centisome position: 28.16

GC content: 68.77

Gene sequence:

>1569_bases
ATGCTCGACGACCAACTCAAATCCCAACTTTCCGCCTATCTGGAGCGCGTGACGCAGTCGTTCGAGATCGTGGCGTCGCT
GGACGGCAGCGACACCTCGGCCCAGATGCGCGACCTGCTGGAGACCATCCAGTCCCTGCGCAGCGACAGGATCAGCCTGC
GCACCGACGGCACCGACGCCCGCAAGCCGTCCTTCACGCTGCAGCGCGCCGGCACGCAGACGAGCCTGCGCTTCGCCGGC
CTGCCCCTCGGCCATGAATTCACCTCGCTCGTGCTGGCGCTGCTCTGGACGGGCGGCCACCCGCCGAAGGTGGAGCAGGA
CGTGATCGAGCAGGTGCAGGCGCTCGACGGCGACTTCGATTTCGAGGTGTACATGAGCCTGACCTGCCACAACTGCCCGG
ACGTGGTGCAGGCGCTGTCGCTCATGGCGATCCTCAACCCCCGCATCCGCACCACCGTGATCGAGGGCGGCGCGTTCCAG
CAGGAAGTGACCGACCGCGAGATCATGGCCGTGCCCATGGTCTTCCTCAACGGCCAGGTGTTCGGCTCCGGCCGCATGAC
CATCGAGGAAATCGTCGGCAAGCTCGACACCGGCGCCGCGAAGCGCGAAGCCGCCAAACTGTCCGCCAAGGAAGCGTTCG
ACGTGCTGATCGTCGGCGGTGGTCCGGCCGGCGCCGCGGCGGCCGTCTATGCCGCCCGCAAGGGCATCCGCATCGGCGTG
GCGGCCGAGCGCTTCGGCGGCCAGGTGAACGACACGCTGGACATCGAGAACTACATCTCGGTCAGCAAGACCGATGGCCC
CAAGTTCGCCGCCGCGCTGGAGCAGCACGTGCGCGACTACGAGGTGGACCTGATGAACCTGCAGCGTGCCCGCGCGCTCA
AGCCCGCCGCCACCGAGGGCGGCCTGATCGAGGTCGAGCTCGAGAACGGCGGCACGCTCTCGTCCCGCACCGTGATCATT
TCCACCGGCGCGCGCTGGCGCAACATGAACGTGCCGGGCGAGGAGCAGTACCGCACCAAGGGCGTGACCTACTGCCCGCA
CTGCGACGGCCCGCTCTTCAAGGGCAAGCGCGTGGCGGTGATCGGCGGCGGCAACTCCGGCGTGGAGGCCGCGATCGACC
TGGCCGGCGTGGTGGCCCACGTCACCGTGCTGGAGTTCGCGGGCGAGCTGAAGGCCGACGCGGTGCTGCAGCGCAAGCTG
CGCAGCCTGCCGAACGTGGACGTGATCCTCAACGCGCAGACCACCGAGGTGAAGGGCGACGGCACCCGGGTGACCGGCCT
GAGCTACAAGGACCGCACGAACGACGAGCACCATGTGCTCGCCCTGGAAGGCATCTTCGTGCAGATCGGCCTGCTGCCCA
ACACCGACTGGCTCAAGGGCACGGTGGACCTGTCGCGGTTCGGCGAGATCGTGGTGGACTCCCATGGCCGCACCAGCGTG
CCGGGCGTGTTCGCGGCCGGCGACTGCACCACGGTGCCCTACAAGCAGATCATCATCGCGGCCGGCGAGGGCGCGAAGGC
GGCGCTGGGCGCGTTCGACCACCTGATCCGCACGACGGCCCCGGCCTGA

Upstream 100 bases:

>100_bases
TGGCGCCCGCGCGCCGTGCCGTCCGGCTTTTTTTCGCCCGCTTTTCGCTCGTTCCCGGCCTCCGGCACCCTGCATGACTC
GAAACCACTGAAGGACTCCC

Downstream 100 bases:

>100_bases
CGCGGCCACCCACCCCACGAAAAAGGGAGCAGCATGGCTGCTCCCTTTGCTTTTGGGGCCCGGCATCCGGCGATGGCCGG
CACGTTGCGGCGGGCCACGC

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: an alcohol; H2O; NAD [C]

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDARKPSFTLQRAGTQTSLRFAG
LPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFDFEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQ
QEVTDREIMAVPMVFLNGQVFGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV
AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEGGLIEVELENGGTLSSRTVII
STGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKL
RSLPNVDVILNAQTTEVKGDGTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV
PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA

Sequences:

>Translated_522_residues
MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDARKPSFTLQRAGTQTSLRFAG
LPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFDFEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQ
QEVTDREIMAVPMVFLNGQVFGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV
AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEGGLIEVELENGGTLSSRTVII
STGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKL
RSLPNVDVILNAQTTEVKGDGTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV
PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA
>Mature_522_residues
MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDARKPSFTLQRAGTQTSLRFAG
LPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFDFEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQ
QEVTDREIMAVPMVFLNGQVFGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV
AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEGGLIEVELENGGTLSSRTVII
STGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKL
RSLPNVDVILNAQTTEVKGDGTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV
PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA

Specific function: Serves to protect the cell against DNA damage by alkyl hydroperoxides. It can use either NADH or NADPH as electron donor for direct reduction of redox dyes or of alkyl hydroperoxides when combined with the AhpC protein [H]

COG id: COG3634

COG function: function code O; Alkyl hydroperoxide reductase, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]

Homologues:

Organism=Escherichia coli, GI87081763, Length=519, Percent_Identity=65.5105973025048, Blast_Score=705, Evalue=0.0,
Organism=Escherichia coli, GI1787114, Length=319, Percent_Identity=35.1097178683386, Blast_Score=160, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6321898, Length=341, Percent_Identity=32.258064516129, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6320560, Length=328, Percent_Identity=33.8414634146341, Blast_Score=149, Evalue=9e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012081
- InterPro:   IPR013027
- InterPro:   IPR002109
- InterPro:   IPR008255
- InterPro:   IPR001327
- InterPro:   IPR000103
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: 1.6.4.- [C]

Molecular weight: Translated: 55957; Mature: 55957

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00573 PYRIDINE_REDOX_2 ; PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDA
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
RKPSFTLQRAGTQTSLRFAGLPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFD
CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
FEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQQEVTDREIMAVPMVFLNGQV
EEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCHHEEEEEEEECCEE
FGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV
ECCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE
AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEG
EHHHHCCCCCCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLIEVELENGGTLSSRTVIISTGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAV
CEEEEEECCCCCCCCCEEEEECCCCEECCCCCCHHHHHHCCCEECCCCCCCCCCCCEEEE
IGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKLRSLPNVDVILNAQTTEVKGD
EECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCEEEECCC
GTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV
CCEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEECHHHCCCEEEECCCCCCC
PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA
CCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLDDQLKSQLSAYLERVTQSFEIVASLDGSDTSAQMRDLLETIQSLRSDRISLRTDGTDA
CCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
RKPSFTLQRAGTQTSLRFAGLPLGHEFTSLVLALLWTGGHPPKVEQDVIEQVQALDGDFD
CCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
FEVYMSLTCHNCPDVVQALSLMAILNPRIRTTVIEGGAFQQEVTDREIMAVPMVFLNGQV
EEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCHHEEEEEEEECCEE
FGSGRMTIEEIVGKLDTGAAKREAAKLSAKEAFDVLIVGGGPAGAAAAVYAARKGIRIGV
ECCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE
AAERFGGQVNDTLDIENYISVSKTDGPKFAAALEQHVRDYEVDLMNLQRARALKPAATEG
EHHHHCCCCCCCCCHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GLIEVELENGGTLSSRTVIISTGARWRNMNVPGEEQYRTKGVTYCPHCDGPLFKGKRVAV
CEEEEEECCCCCCCCCEEEEECCCCEECCCCCCHHHHHHCCCEECCCCCCCCCCCCEEEE
IGGGNSGVEAAIDLAGVVAHVTVLEFAGELKADAVLQRKLRSLPNVDVILNAQTTEVKGD
EECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCEEEECCC
GTRVTGLSYKDRTNDEHHVLALEGIFVQIGLLPNTDWLKGTVDLSRFGEIVVDSHGRTSV
CCEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEECHHHCCCEEEECCCCCCC
PGVFAAGDCTTVPYKQIIIAAGEGAKAALGAFDHLIRTTAPA
CCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: FAD. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ROOH; Proton; NADH [C]

Specific reaction: ROOH + Proton + NADH = an alcohol + H2O + NAD [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]