Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120610040
Identifier: 120610040
GI number: 120610040
Start: 1481087
End: 1482643
Strand: Direct
Name: 120610040
Synonym: Aave_1353
Alternate gene names: NA
Gene position: 1481087-1482643 (Clockwise)
Preceding gene: 120610039
Following gene: 120610041
Centisome position: 27.67
GC content: 68.46
Gene sequence:
>1557_bases ATGCAGAAGTTCGACGAGATGTACGAGATGCTGCCCTTCGATGGCAGCGATGTGCGCCCCCACTACCAGCGCTACGGCCA GTGGCTGTCGCGCCAGCCGGCCGAGGCGATGCAGGCGCGCCGCGCCGAGGCCGAGATGATCTTCCGCCGCGTGGGCATCA CCTTCGCGGTCTATGGCGCCAAGGACGAGAACGGGGCCGGCACCGAGCGGCTCATCCCCTTCGACCTGATCCCCCGCATC ATTCCCGCCCACGAATGGGCGCGCATGCAGCAGGGGCTCGTGCAGCGGGTGACGGCGCTCAACCGCTTCATCCACGACAT CTACCATGGCCAGGACATCCTGCGCGCGGGCATCGTGCCGTCCGACCTGATCGTGGGCAATGCGCAGTTCCGCCCCGAGA TGGCGGGCGTGGACGTGCCGTGCGACGTGTACGCCCACATCGCCGGCATCGACATCGTGCGCGCGCCGGACGGGCAGGGC AACGGCATCTACTACGTGCTGGAGGACAACCTGCGCGTGCCCTCGGGCGTGTCGTACATGCTGGAGAACCGCAAGATGAT GATGCGGCTCTTCCCCGAACTGTTCCGCAGCCACCGCGTGGCGCCCGTGGCCCACTACCCCGACCTGCTGCTGGACACGC TGCGCGCCAGCGCGCCGGCCGGCGCGGCCGAGCCCACGGTGGTGTTGCTCACCCCGGGCATGTACAACAGCGCGTACTTC GAGCATGCCTTCCTCGCGCAGCAGATGGGCGTGGAGCTGGTCGAGGGGCAGGACCTGGTCGTCAAGGAGAACTTCGTCTA CATGCGCACCACGCGCGGGCTGCAGCGCGTGGATGTGATCTACCGCCGCGTGGACGACGACTTCCTCGATCCGCAGGTCT TCCGTCCTGCGTCCACGCTGGGCTGCGCCGGCCTCATGGCTGCGTACCGCGCGGGCAACGTGGCGATCTGCAATGCCGTG GGCACGGGCATCGCGGACGACAAGTCCGTCTATCCGTACGTGCCGGAGATGATCCGCTTCTACCTGGGCGAAGAGCCCAT CCTGGCGAACGTGCCCACCTGGATGTGCCGCAAGCAGGACGACCTGCGGTACGTGCTGGACCACCTGCACGAGCTGGTGG TGAAGGAAGTGCACGGCGCGGGCGGCTACGGCATGCTGATCGGCCCGGCCGCGACCAAGGCGGAAATCGAGGAGTTCCGC GGCGCGCTGCTGGCGAACCCGGCCGGCTACATCGCGCAGCCCACGCTGTCGCTCTCGAGCTGCCCCACCTACGTGGAATC GGGCATCGCCCCGCGCCACATCGACCTGCGGCCCTTCGTGCTCTCTGGCCAGAAGGTGCAGATGGTGGCCGGCGGTCTCA CGCGCGTGGCGCTGAAGGAGGGTTCGCTGGTCGTCAATTCATCGCAGGGCGGCGGCACCAAGGACACCTGGGTGCTGGGC GACGGCGACGCCAACGGCACGCCCGCCGCGGGCCTGTCGCAGTCCATGGGTGCCATGACCCAGACCCTGGGCGCCCCGGG CGCCATGGCCATGTCGCAGTCGATGGGAGGGAAGTGA
Upstream 100 bases:
>100_bases TTTCTGACAGCGGAATCCGGCGAAGCCCCGCGCACGGGGCGCGCGACCGGCGGCCTGGCAGGCTTGCAACTTGCTATGCT GGCTGCAGGAGGCACCACTG
Downstream 100 bases:
>100_bases GATGCTGAGCCGTACTGCCGATCATCTGTTCTGGATGTCCCGCTACACTGAGCGGGCCGAGAACACCGCCCGCATGCTGA ACGTCAGCTACGAGACCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MQKFDEMYEMLPFDGSDVRPHYQRYGQWLSRQPAEAMQARRAEAEMIFRRVGITFAVYGAKDENGAGTERLIPFDLIPRI IPAHEWARMQQGLVQRVTALNRFIHDIYHGQDILRAGIVPSDLIVGNAQFRPEMAGVDVPCDVYAHIAGIDIVRAPDGQG NGIYYVLEDNLRVPSGVSYMLENRKMMMRLFPELFRSHRVAPVAHYPDLLLDTLRASAPAGAAEPTVVLLTPGMYNSAYF EHAFLAQQMGVELVEGQDLVVKENFVYMRTTRGLQRVDVIYRRVDDDFLDPQVFRPASTLGCAGLMAAYRAGNVAICNAV GTGIADDKSVYPYVPEMIRFYLGEEPILANVPTWMCRKQDDLRYVLDHLHELVVKEVHGAGGYGMLIGPAATKAEIEEFR GALLANPAGYIAQPTLSLSSCPTYVESGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVLG DGDANGTPAAGLSQSMGAMTQTLGAPGAMAMSQSMGGK
Sequences:
>Translated_518_residues MQKFDEMYEMLPFDGSDVRPHYQRYGQWLSRQPAEAMQARRAEAEMIFRRVGITFAVYGAKDENGAGTERLIPFDLIPRI IPAHEWARMQQGLVQRVTALNRFIHDIYHGQDILRAGIVPSDLIVGNAQFRPEMAGVDVPCDVYAHIAGIDIVRAPDGQG NGIYYVLEDNLRVPSGVSYMLENRKMMMRLFPELFRSHRVAPVAHYPDLLLDTLRASAPAGAAEPTVVLLTPGMYNSAYF EHAFLAQQMGVELVEGQDLVVKENFVYMRTTRGLQRVDVIYRRVDDDFLDPQVFRPASTLGCAGLMAAYRAGNVAICNAV GTGIADDKSVYPYVPEMIRFYLGEEPILANVPTWMCRKQDDLRYVLDHLHELVVKEVHGAGGYGMLIGPAATKAEIEEFR GALLANPAGYIAQPTLSLSSCPTYVESGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVLG DGDANGTPAAGLSQSMGAMTQTLGAPGAMAMSQSMGGK >Mature_518_residues MQKFDEMYEMLPFDGSDVRPHYQRYGQWLSRQPAEAMQARRAEAEMIFRRVGITFAVYGAKDENGAGTERLIPFDLIPRI IPAHEWARMQQGLVQRVTALNRFIHDIYHGQDILRAGIVPSDLIVGNAQFRPEMAGVDVPCDVYAHIAGIDIVRAPDGQG NGIYYVLEDNLRVPSGVSYMLENRKMMMRLFPELFRSHRVAPVAHYPDLLLDTLRASAPAGAAEPTVVLLTPGMYNSAYF EHAFLAQQMGVELVEGQDLVVKENFVYMRTTRGLQRVDVIYRRVDDDFLDPQVFRPASTLGCAGLMAAYRAGNVAICNAV GTGIADDKSVYPYVPEMIRFYLGEEPILANVPTWMCRKQDDLRYVLDHLHELVVKEVHGAGGYGMLIGPAATKAEIEEFR GALLANPAGYIAQPTLSLSSCPTYVESGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVLG DGDANGTPAAGLSQSMGAMTQTLGAPGAMAMSQSMGGK
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 56761; Mature: 56761
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKFDEMYEMLPFDGSDVRPHYQRYGQWLSRQPAEAMQARRAEAEMIFRRVGITFAVYGA CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC KDENGAGTERLIPFDLIPRIIPAHEWARMQQGLVQRVTALNRFIHDIYHGQDILRAGIVP CCCCCCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC SDLIVGNAQFRPEMAGVDVPCDVYAHIAGIDIVRAPDGQGNGIYYVLEDNLRVPSGVSYM CCEEECCCCCCCCCCCCCCCHHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCHHHH LENRKMMMRLFPELFRSHRVAPVAHYPDLLLDTLRASAPAGAAEPTVVLLTPGMYNSAYF HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH EHAFLAQQMGVELVEGQDLVVKENFVYMRTTRGLQRVDVIYRRVDDDFLDPQVFRPASTL HHHHHHHHHCCEEECCCCEEEECCEEEEEHHCCHHHHHHHHHHHCCCCCCCHHCCCHHHH GCAGLMAAYRAGNVAICNAVGTGIADDKSVYPYVPEMIRFYLGEEPILANVPTWMCRKQD HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCCC DLRYVLDHLHELVVKEVHGAGGYGMLIGPAATKAEIEEFRGALLANPAGYIAQPTLSLSS HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCHHHCCCCCCEECCCCCHHC CPTYVESGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVLG CCHHHHCCCCCCEECCCCEEECCCEEEEECCCHHEEEEECCCEEEECCCCCCCCCEEEEE DGDANGTPAAGLSQSMGAMTQTLGAPGAMAMSQSMGGK CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCC >Mature Secondary Structure MQKFDEMYEMLPFDGSDVRPHYQRYGQWLSRQPAEAMQARRAEAEMIFRRVGITFAVYGA CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEC KDENGAGTERLIPFDLIPRIIPAHEWARMQQGLVQRVTALNRFIHDIYHGQDILRAGIVP CCCCCCCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC SDLIVGNAQFRPEMAGVDVPCDVYAHIAGIDIVRAPDGQGNGIYYVLEDNLRVPSGVSYM CCEEECCCCCCCCCCCCCCCHHHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCHHHH LENRKMMMRLFPELFRSHRVAPVAHYPDLLLDTLRASAPAGAAEPTVVLLTPGMYNSAYF HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHH EHAFLAQQMGVELVEGQDLVVKENFVYMRTTRGLQRVDVIYRRVDDDFLDPQVFRPASTL HHHHHHHHHCCEEECCCCEEEECCEEEEEHHCCHHHHHHHHHHHCCCCCCCHHCCCHHHH GCAGLMAAYRAGNVAICNAVGTGIADDKSVYPYVPEMIRFYLGEEPILANVPTWMCRKQD HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHHHCCCC DLRYVLDHLHELVVKEVHGAGGYGMLIGPAATKAEIEEFRGALLANPAGYIAQPTLSLSS HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCHHHCCCCCCEECCCCCHHC CPTYVESGIAPRHIDLRPFVLSGQKVQMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVLG CCHHHHCCCCCCEECCCCEEECCCEEEEECCCHHEEEEECCCEEEECCCCCCCCCEEEEE DGDANGTPAAGLSQSMGAMTQTLGAPGAMAMSQSMGGK CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]