Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is pdxY [H]
Identifier: 120610032
GI number: 120610032
Start: 1474007
End: 1474948
Strand: Reverse
Name: pdxY [H]
Synonym: Aave_1345
Alternate gene names: 120610032
Gene position: 1474948-1474007 (Counterclockwise)
Preceding gene: 120610033
Following gene: 120610026
Centisome position: 27.55
GC content: 73.46
Gene sequence:
>942_bases GTGAGCGCCACCGCAGCCCCTTCCGCCAACCCGCCTGCACCGGCCTCGGCCGGGGAGCCGCCGCTGGTGCTCTCCATCCA GTCGCATGTCGCCTTCGGGCACGTGGGCAACGACGCGGCCATGCTGCCGCTGCAACTGCTGGGCATCCAGCCGGTGGCCG TGCATACGGTGCAGTTCTCCAACCACACGGGCTACGGCGAGTTCAAGGGGCAGGTCTTCCCGCCCGCGCACATCGGCGAC GTGCTCGATGGCCTGCGTGCGCGCGGCGTGCTGGCACGCTGCACGGCGGTGCTCTCGGGCTACCTGGGCGATGCCGGCGT GGGCGAGGCCATCCTGGCCGCGGTGCAGGAGATCCGGGCCGTTCGCCCGGGCCTGCGCTACCTGTGCGATCCGGTGATGG GCGACGTGGGCCGCGGCGTGTTCGTGCGCCCGGGCATCCCGGAATTCCTGCGCCGCCGCGCGCTGGCGCAGGCCAGCATC ATCACCCCCAACCAGTACGAATTCGAGTTGCTGCACGGCGCGCCGCTGGCCTCGGTGGACGAGGCGGTGGCCGCCGCGCG CGCGCTGCTGGGCGACGCCGCCGGAACAGGCCCTTCGCTCATCGTGGTGACCAGCCTGCGCACGCCGGACCTGCCGGACG ACCGGCTGGCCACGCTGGCCGTCACGGAGGAGGCCGCCTGGCTGGTGCGCACGCCGTTCATCGACCTGCAGCCCCTGCCC AATGGCATGGGCGACGTGTTCTCGGCCGTTCTGCTGGGCCACCTGCTGCGCGGCGCATCGACGCCGGACGCGGTGTCGAG CGCGGTCAGCAGCCTGTACGCACTGGTGTCGCGCACCGCGCCGGGCCAGCGCGACCTGCCCCTGGTGGCCTGCCGCGAGC AGATCGCGCAGCCGTCGGAGCGTTTCGCCGCCGAGATGGTGGGCGCCCCGACGCGGCCCTGA
Upstream 100 bases:
>100_bases GCAAGCACGCGCGCAGCGCCTTCGGCGTGGCGCAGATCCCCATGGGTGCCTGCGTGGAGATCGAGCTGATCGCCGAACTG GCCTGAGCGCCGAGGACGCC
Downstream 100 bases:
>100_bases GACAGAGTTCCGGCCGCGGCCCGGATCAGGCCGCCAGCGTGCGCGGCCCGCCCCGCACGGGCTGCTGCAGCGCCGCGCCG GCAGCCCCCGGCAGGGCGCG
Product: pyridoxal kinase
Products: NA
Alternate protein names: PM kinase [H]
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MSATAAPSANPPAPASAGEPPLVLSIQSHVAFGHVGNDAAMLPLQLLGIQPVAVHTVQFSNHTGYGEFKGQVFPPAHIGD VLDGLRARGVLARCTAVLSGYLGDAGVGEAILAAVQEIRAVRPGLRYLCDPVMGDVGRGVFVRPGIPEFLRRRALAQASI ITPNQYEFELLHGAPLASVDEAVAAARALLGDAAGTGPSLIVVTSLRTPDLPDDRLATLAVTEEAAWLVRTPFIDLQPLP NGMGDVFSAVLLGHLLRGASTPDAVSSAVSSLYALVSRTAPGQRDLPLVACREQIAQPSERFAAEMVGAPTRP
Sequences:
>Translated_313_residues MSATAAPSANPPAPASAGEPPLVLSIQSHVAFGHVGNDAAMLPLQLLGIQPVAVHTVQFSNHTGYGEFKGQVFPPAHIGD VLDGLRARGVLARCTAVLSGYLGDAGVGEAILAAVQEIRAVRPGLRYLCDPVMGDVGRGVFVRPGIPEFLRRRALAQASI ITPNQYEFELLHGAPLASVDEAVAAARALLGDAAGTGPSLIVVTSLRTPDLPDDRLATLAVTEEAAWLVRTPFIDLQPLP NGMGDVFSAVLLGHLLRGASTPDAVSSAVSSLYALVSRTAPGQRDLPLVACREQIAQPSERFAAEMVGAPTRP >Mature_312_residues SATAAPSANPPAPASAGEPPLVLSIQSHVAFGHVGNDAAMLPLQLLGIQPVAVHTVQFSNHTGYGEFKGQVFPPAHIGDV LDGLRARGVLARCTAVLSGYLGDAGVGEAILAAVQEIRAVRPGLRYLCDPVMGDVGRGVFVRPGIPEFLRRRALAQASII TPNQYEFELLHGAPLASVDEAVAAARALLGDAAGTGPSLIVVTSLRTPDLPDDRLATLAVTEEAAWLVRTPFIDLQPLPN GMGDVFSAVLLGHLLRGASTPDAVSSAVSSLYALVSRTAPGQRDLPLVACREQIAQPSERFAAEMVGAPTRP
Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxamine [H]
COG id: COG2240
COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyridoxine kinase family [H]
Homologues:
Organism=Homo sapiens, GI4505701, Length=310, Percent_Identity=33.2258064516129, Blast_Score=144, Evalue=8e-35, Organism=Escherichia coli, GI1787924, Length=284, Percent_Identity=41.1971830985916, Blast_Score=217, Evalue=9e-58, Organism=Escherichia coli, GI1788758, Length=248, Percent_Identity=33.0645161290323, Blast_Score=124, Evalue=6e-30, Organism=Caenorhabditis elegans, GI17507759, Length=260, Percent_Identity=31.5384615384615, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17507757, Length=270, Percent_Identity=30.3703703703704, Blast_Score=113, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6320806, Length=249, Percent_Identity=36.5461847389558, Blast_Score=124, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324354, Length=297, Percent_Identity=29.96632996633, Blast_Score=110, Evalue=4e-25, Organism=Drosophila melanogaster, GI45553007, Length=305, Percent_Identity=32.1311475409836, Blast_Score=136, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013749 - InterPro: IPR004625 [H]
Pfam domain/function: PF08543 Phos_pyr_kin [H]
EC number: =2.7.1.35 [H]
Molecular weight: Translated: 32529; Mature: 32397
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATAAPSANPPAPASAGEPPLVLSIQSHVAFGHVGNDAAMLPLQLLGIQPVAVHTVQFS CCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEC NHTGYGEFKGQVFPPAHIGDVLDGLRARGVLARCTAVLSGYLGDAGVGEAILAAVQEIRA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VRPGLRYLCDPVMGDVGRGVFVRPGIPEFLRRRALAQASIITPNQYEFELLHGAPLASVD HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH EAVAAARALLGDAAGTGPSLIVVTSLRTPDLPDDRLATLAVTEEAAWLVRTPFIDLQPLP HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCC NGMGDVFSAVLLGHLLRGASTPDAVSSAVSSLYALVSRTAPGQRDLPLVACREQIAQPSE CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHH RFAAEMVGAPTRP HHHHHHHCCCCCC >Mature Secondary Structure SATAAPSANPPAPASAGEPPLVLSIQSHVAFGHVGNDAAMLPLQLLGIQPVAVHTVQFS CCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHCCCCEEEEEEEEC NHTGYGEFKGQVFPPAHIGDVLDGLRARGVLARCTAVLSGYLGDAGVGEAILAAVQEIRA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH VRPGLRYLCDPVMGDVGRGVFVRPGIPEFLRRRALAQASIITPNQYEFELLHGAPLASVD HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH EAVAAARALLGDAAGTGPSLIVVTSLRTPDLPDDRLATLAVTEEAAWLVRTPFIDLQPLP HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEECCCEECCCCC NGMGDVFSAVLLGHLLRGASTPDAVSSAVSSLYALVSRTAPGQRDLPLVACREQIAQPSE CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHH RFAAEMVGAPTRP HHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA