Click here to switch to the map view.

The map label for this gene is ybfB [H]

Identifier: 120610026

GI number: 120610026

Start: 1463598

End: 1464836

Strand: Reverse

Name: ybfB [H]

Synonym: Aave_1339

Alternate gene names: 120610026

Gene position: 1464836-1463598 (Counterclockwise)

Preceding gene: 120610032

Following gene: 120610025

Centisome position: 27.37

GC content: 70.22

Gene sequence:

>1239_bases
ATGTCCTCCGAAAACCCGAAGCTCTCCATGGCGCAGGTCCTGGCCTGCGGCGCGGCCGTCGTCACGCTCTCCATGGGCAT
ACGCCACGGCTTCGGCCTGTGGCTGCAGCCGATCACGCAGGACATGGGCTGGACCCGCCAGACCTTCGCGCTCGCGCTCG
CCGTGCAGAACATCGCCTGGGGCCTGTTCGGCATCTTCGCGGGCATGGCGGCCGACCGCTTCGGAGCGTTCCGCGTGCTG
ATCGCCGGGGCGGTGCTGTATGCCTTCGGGCTGGCCGGCATGGCGCTGTCGCCCACGCCCCTGCTGTTCGCCCTCACGGC
CGGCGTGCTGATCGGCGCGGCCCAGGCGGGCACCACCTATGCCGTGATCTACGGCGTGCTGGGCCGCCAGATCGCGCCCG
AGAAGCGCTCCTGGGCCATGGGCGTGGCCGCGGCCGCCGGCTCGTTCGGGCAGTTCCTGATGGTGCCCGTCGAGGGCCAG
TTGATCGCCCGCCTGGGATGGCAGGAATCGCTGCTCGCCCTCTCGGCCATGGTGCTGCTCATCGTGCCGCTGGCCTTCGG
CCTGCGCGAGCCGGGCTTCGGCCGCCGGGCGGCAGGCGCCCCCGCCGCGCCGCGCAGCCAGACGGTGGGAGAGGCCCTGT
CCGAAGCGCTGCGCTATCCCAGCTTCCTGCTGCTCACGGCCGGGTACTTCGTGTGCGGGTTCCAGGTGGTGTTCATCGGC
GTGCACATGCCCAGCTACCTCAAGGACCACGGCCTCTCGCCCCAGGTGGCGAGCTACGCGCTGGCCCTGATCGGCCTCTT
CAACGTCTTCGGCACCTACATCGCCGGCACCCTCGGCCAGCGCATGGCGCGCCGGCACATCCTGGCCTTCATCTATTTCG
CCCGCGCCGTGGCGATCACCGTGTTCCTGCTCGCGCCGCTCACCCCCGTCTCGGTGTACGTGTTTTCCGCGGTCATCGGG
TTCCTGTGGCTGTCCACCGTGCCGCCCACCAACGCCACGGTGGCACAGATCTTCGGTGTGCAGCACCTCTCGATGCTGGG
CGGGTTCGTGTTCTTCAGCCACCAGATCGGCAGCTTCCTGGGCGTCTGGCTGGGCGGCTACCTCTACGACCGCACTGGCA
GCTACGACGTGGTCTGGTACCTCGCCATCGCCTTGGGGCTGGTGGCCGGCCTCATCAACCTGCCGGTGCGCGAAACGCCG
ATCACGCGCGCCCCGGTCCGGACGGGCGCCGCCGCCTGA

Upstream 100 bases:

>100_bases
CCCGGCGGTACTGGATGGAAAGACAGCCACCCGCCTGCCACGCGGGTTAACCCGCATTTCCCGGCAAGCGCCGGCGGACG
CTTTTGGCTACATTCACCGG

Downstream 100 bases:

>100_bases
GGCAGGGCATGCGCATGGCCTCCACCCCCCTGGCCGCCCCCTCCCCCCGGCGCCCCGGCTGGAAGCGGTGGCTGCCCTGG
GCCATCGCGGCCGCCGCGGT

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAWGLFGIFAGMAADRFGAFRVL
IAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTYAVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQ
LIARLGWQESLLALSAMVLLIVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG
VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAITVFLLAPLTPVSVYVFSAVIG
FLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFLGVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETP
ITRAPVRTGAAA

Sequences:

>Translated_412_residues
MSSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAWGLFGIFAGMAADRFGAFRVL
IAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTYAVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQ
LIARLGWQESLLALSAMVLLIVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG
VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAITVFLLAPLTPVSVYVFSAVIG
FLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFLGVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETP
ITRAPVRTGAAA
>Mature_411_residues
SSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAWGLFGIFAGMAADRFGAFRVLI
AGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTYAVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQL
IARLGWQESLLALSAMVLLIVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIGV
HMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAITVFLLAPLTPVSVYVFSAVIGF
LWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFLGVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETPI
TRAPVRTGAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789969, Length=296, Percent_Identity=23.3108108108108, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43649; Mature: 43518

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
GLFGIFAGMAADRFGAFRVLIAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHH
AVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQLIARLGWQESLLALSAMVLL
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHH
IVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAIT
HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFLLAPLTPVSVYVFSAVIGFLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFL
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETPITRAPVRTGAAA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]