Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ybfB [H]
Identifier: 120610026
GI number: 120610026
Start: 1463598
End: 1464836
Strand: Reverse
Name: ybfB [H]
Synonym: Aave_1339
Alternate gene names: 120610026
Gene position: 1464836-1463598 (Counterclockwise)
Preceding gene: 120610032
Following gene: 120610025
Centisome position: 27.37
GC content: 70.22
Gene sequence:
>1239_bases ATGTCCTCCGAAAACCCGAAGCTCTCCATGGCGCAGGTCCTGGCCTGCGGCGCGGCCGTCGTCACGCTCTCCATGGGCAT ACGCCACGGCTTCGGCCTGTGGCTGCAGCCGATCACGCAGGACATGGGCTGGACCCGCCAGACCTTCGCGCTCGCGCTCG CCGTGCAGAACATCGCCTGGGGCCTGTTCGGCATCTTCGCGGGCATGGCGGCCGACCGCTTCGGAGCGTTCCGCGTGCTG ATCGCCGGGGCGGTGCTGTATGCCTTCGGGCTGGCCGGCATGGCGCTGTCGCCCACGCCCCTGCTGTTCGCCCTCACGGC CGGCGTGCTGATCGGCGCGGCCCAGGCGGGCACCACCTATGCCGTGATCTACGGCGTGCTGGGCCGCCAGATCGCGCCCG AGAAGCGCTCCTGGGCCATGGGCGTGGCCGCGGCCGCCGGCTCGTTCGGGCAGTTCCTGATGGTGCCCGTCGAGGGCCAG TTGATCGCCCGCCTGGGATGGCAGGAATCGCTGCTCGCCCTCTCGGCCATGGTGCTGCTCATCGTGCCGCTGGCCTTCGG CCTGCGCGAGCCGGGCTTCGGCCGCCGGGCGGCAGGCGCCCCCGCCGCGCCGCGCAGCCAGACGGTGGGAGAGGCCCTGT CCGAAGCGCTGCGCTATCCCAGCTTCCTGCTGCTCACGGCCGGGTACTTCGTGTGCGGGTTCCAGGTGGTGTTCATCGGC GTGCACATGCCCAGCTACCTCAAGGACCACGGCCTCTCGCCCCAGGTGGCGAGCTACGCGCTGGCCCTGATCGGCCTCTT CAACGTCTTCGGCACCTACATCGCCGGCACCCTCGGCCAGCGCATGGCGCGCCGGCACATCCTGGCCTTCATCTATTTCG CCCGCGCCGTGGCGATCACCGTGTTCCTGCTCGCGCCGCTCACCCCCGTCTCGGTGTACGTGTTTTCCGCGGTCATCGGG TTCCTGTGGCTGTCCACCGTGCCGCCCACCAACGCCACGGTGGCACAGATCTTCGGTGTGCAGCACCTCTCGATGCTGGG CGGGTTCGTGTTCTTCAGCCACCAGATCGGCAGCTTCCTGGGCGTCTGGCTGGGCGGCTACCTCTACGACCGCACTGGCA GCTACGACGTGGTCTGGTACCTCGCCATCGCCTTGGGGCTGGTGGCCGGCCTCATCAACCTGCCGGTGCGCGAAACGCCG ATCACGCGCGCCCCGGTCCGGACGGGCGCCGCCGCCTGA
Upstream 100 bases:
>100_bases CCCGGCGGTACTGGATGGAAAGACAGCCACCCGCCTGCCACGCGGGTTAACCCGCATTTCCCGGCAAGCGCCGGCGGACG CTTTTGGCTACATTCACCGG
Downstream 100 bases:
>100_bases GGCAGGGCATGCGCATGGCCTCCACCCCCCTGGCCGCCCCCTCCCCCCGGCGCCCCGGCTGGAAGCGGTGGCTGCCCTGG GCCATCGCGGCCGCCGCGGT
Product: major facilitator superfamily transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MSSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAWGLFGIFAGMAADRFGAFRVL IAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTYAVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQ LIARLGWQESLLALSAMVLLIVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAITVFLLAPLTPVSVYVFSAVIG FLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFLGVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETP ITRAPVRTGAAA
Sequences:
>Translated_412_residues MSSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAWGLFGIFAGMAADRFGAFRVL IAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTYAVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQ LIARLGWQESLLALSAMVLLIVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAITVFLLAPLTPVSVYVFSAVIG FLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFLGVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETP ITRAPVRTGAAA >Mature_411_residues SSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAWGLFGIFAGMAADRFGAFRVLI AGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTYAVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQL IARLGWQESLLALSAMVLLIVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIGV HMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAITVFLLAPLTPVSVYVFSAVIGF LWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFLGVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETPI TRAPVRTGAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1789969, Length=296, Percent_Identity=23.3108108108108, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43649; Mature: 43518
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAW CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH GLFGIFAGMAADRFGAFRVLIAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHH AVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQLIARLGWQESLLALSAMVLL HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHH IVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAIT HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLLAPLTPVSVYVFSAVIGFLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFL HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETPITRAPVRTGAAA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSENPKLSMAQVLACGAAVVTLSMGIRHGFGLWLQPITQDMGWTRQTFALALAVQNIAW CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH GLFGIFAGMAADRFGAFRVLIAGAVLYAFGLAGMALSPTPLLFALTAGVLIGAAQAGTTY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHH AVIYGVLGRQIAPEKRSWAMGVAAAAGSFGQFLMVPVEGQLIARLGWQESLLALSAMVLL HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHHHH IVPLAFGLREPGFGRRAAGAPAAPRSQTVGEALSEALRYPSFLLLTAGYFVCGFQVVFIG HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH VHMPSYLKDHGLSPQVASYALALIGLFNVFGTYIAGTLGQRMARRHILAFIYFARAVAIT HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFLLAPLTPVSVYVFSAVIGFLWLSTVPPTNATVAQIFGVQHLSMLGGFVFFSHQIGSFL HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVWLGGYLYDRTGSYDVVWYLAIALGLVAGLINLPVRETPITRAPVRTGAAA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]