Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is dapA [H]
Identifier: 120610024
GI number: 120610024
Start: 1461823
End: 1462719
Strand: Reverse
Name: dapA [H]
Synonym: Aave_1337
Alternate gene names: 120610024
Gene position: 1462719-1461823 (Counterclockwise)
Preceding gene: 120610025
Following gene: 120610023
Centisome position: 27.33
GC content: 68.56
Gene sequence:
>897_bases ATGACCTCTTCCAGCGCCACCCTCACCGGCAGCATCGTCGCCCTCGTCACCCCCATGCACGAGGACGGCAGCGTGGACTA CCCCACCCTGCGCAAGCTGATCGACTGGCATGTCGCCGAAGGGACCGACTGCATCGGCGTGGTGGGCACCACCGGCGAAT CGCCCACCGTCAACGTCGAGGAGCACTGCGAGATCATCCGCGTGGCCGTCGAGCAGGCCGCCAGGCGCGTGCCGATCATG GCCGGCTGCGGCGCCAACTCCACGGCCGAGGCCATCGAACTGGCCCGCTTCGCCAAGAAGGTGGGCGCGGACAGCCAGCT CCAGGTCGTTCCCTACTACAACAAGCCCACGCAGGAAGGGCAGTACCAGCACTTCAGGTCCATAGCCGAAGCCGTGGGCG ACCTGCCCACCGTCCTCTACAACGTGCCCGGCCGCTCCGTCGCCGATATGCAGCACGACACCGTGCTGCGCCTCGCGCAG GTGCCCGGCATCATCGGCATCAAGGAAGCCACAGGCAACATCGAGCGCGCGCAATGGCTGATCCGCGACGTGCCCGAAGG CTTCGCCGTCTATTCGGGCGACGACCCGACAGCCGTGGCCCTGATGCTCTGCGGCGGGCAGGGCAACATCAGCGTGACCG CCAACGTGGCCCCGCGCCTGATGCACGAACTCTGCGTGGCCGCCCTGGCCGGCGACGTGCGCCGGGCCATGGAGATCCAG TTCCGCCTGATGCCTGTCCACAAGCACCTCTTCGTCGAGGCCAACCCCATTCCGGTGAAGTGGGCGATGCAGCGCATGGG CCTGTGCGGCGGCACGATGCGCCTGCCCATGACGCCCCTCTCCCCCGGCAGCGAGCCCGTGGTGGAAGCCGCGCTGCGCT CCGCTGGCCTGCTCTGA
Upstream 100 bases:
>100_bases CCACCCCGCCATCCCCTCGTACCGCCACCCTCCGGTTAACCCCCGGGCGGGCCGGTTACACACTCGTTAGAATGCTCTTT TACCGTTTTCCTTCGTGGAC
Downstream 100 bases:
>100_bases AGCACGTCCGCCTCCGCCTGCGCCCGTCTTTCCCCACCGCAGCCAGCCTCCAGAGACTCCCTCAAAGGATTTTTGCGTGA ACGCTATCAATCGCCTGGGC
Product: dihydrodipicolinate synthase
Products: NA
Alternate protein names: DHDPS [H]
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MTSSSATLTGSIVALVTPMHEDGSVDYPTLRKLIDWHVAEGTDCIGVVGTTGESPTVNVEEHCEIIRVAVEQAARRVPIM AGCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEGQYQHFRSIAEAVGDLPTVLYNVPGRSVADMQHDTVLRLAQ VPGIIGIKEATGNIERAQWLIRDVPEGFAVYSGDDPTAVALMLCGGQGNISVTANVAPRLMHELCVAALAGDVRRAMEIQ FRLMPVHKHLFVEANPIPVKWAMQRMGLCGGTMRLPMTPLSPGSEPVVEAALRSAGLL
Sequences:
>Translated_298_residues MTSSSATLTGSIVALVTPMHEDGSVDYPTLRKLIDWHVAEGTDCIGVVGTTGESPTVNVEEHCEIIRVAVEQAARRVPIM AGCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEGQYQHFRSIAEAVGDLPTVLYNVPGRSVADMQHDTVLRLAQ VPGIIGIKEATGNIERAQWLIRDVPEGFAVYSGDDPTAVALMLCGGQGNISVTANVAPRLMHELCVAALAGDVRRAMEIQ FRLMPVHKHLFVEANPIPVKWAMQRMGLCGGTMRLPMTPLSPGSEPVVEAALRSAGLL >Mature_297_residues TSSSATLTGSIVALVTPMHEDGSVDYPTLRKLIDWHVAEGTDCIGVVGTTGESPTVNVEEHCEIIRVAVEQAARRVPIMA GCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEGQYQHFRSIAEAVGDLPTVLYNVPGRSVADMQHDTVLRLAQV PGIIGIKEATGNIERAQWLIRDVPEGFAVYSGDDPTAVALMLCGGQGNISVTANVAPRLMHELCVAALAGDVRRAMEIQF RLMPVHKHLFVEANPIPVKWAMQRMGLCGGTMRLPMTPLSPGSEPVVEAALRSAGLL
Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; first step. [C]
COG id: COG0329
COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DHDPS family [H]
Homologues:
Organism=Homo sapiens, GI31543060, Length=287, Percent_Identity=25.7839721254355, Blast_Score=95, Evalue=1e-19, Organism=Homo sapiens, GI13540533, Length=306, Percent_Identity=24.8366013071895, Blast_Score=89, Evalue=3e-18, Organism=Escherichia coli, GI1788823, Length=292, Percent_Identity=52.7397260273973, Blast_Score=294, Evalue=4e-81, Organism=Escherichia coli, GI87082415, Length=299, Percent_Identity=31.438127090301, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1789620, Length=236, Percent_Identity=28.8135593220339, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI1786463, Length=289, Percent_Identity=32.5259515570934, Blast_Score=124, Evalue=8e-30,
Paralogues:
None
Copy number: 840 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR005263 - InterPro: IPR002220 - InterPro: IPR020625 [H]
Pfam domain/function: PF00701 DHDPS [H]
EC number: =4.2.1.52 [H]
Molecular weight: Translated: 31918; Mature: 31787
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS00666 DHDPS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSSATLTGSIVALVTPMHEDGSVDYPTLRKLIDWHVAEGTDCIGVVGTTGESPTVNVE CCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECHH EHCEIIRVAVEQAARRVPIMAGCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEG HHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC QYQHFRSIAEAVGDLPTVLYNVPGRSVADMQHDTVLRLAQVPGIIGIKEATGNIERAQWL HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH IRDVPEGFAVYSGDDPTAVALMLCGGQGNISVTANVAPRLMHELCVAALAGDVRRAMEIQ HHHCCCCCEEECCCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHE FRLMPVHKHLFVEANPIPVKWAMQRMGLCGGTMRLPMTPLSPGSEPVVEAALRSAGLL EEEEEEEEEEEEECCCCCHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure TSSSATLTGSIVALVTPMHEDGSVDYPTLRKLIDWHVAEGTDCIGVVGTTGESPTVNVE CCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECHH EHCEIIRVAVEQAARRVPIMAGCGANSTAEAIELARFAKKVGADSQLQVVPYYNKPTQEG HHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC QYQHFRSIAEAVGDLPTVLYNVPGRSVADMQHDTVLRLAQVPGIIGIKEATGNIERAQWL HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH IRDVPEGFAVYSGDDPTAVALMLCGGQGNISVTANVAPRLMHELCVAALAGDVRRAMEIQ HHHCCCCCEEECCCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHE FRLMPVHKHLFVEANPIPVKWAMQRMGLCGGTMRLPMTPLSPGSEPVVEAALRSAGLL EEEEEEEEEEEEECCCCCHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA