Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is kdsA
Identifier: 120610013
GI number: 120610013
Start: 1451707
End: 1452564
Strand: Reverse
Name: kdsA
Synonym: Aave_1326
Alternate gene names: 120610013
Gene position: 1452564-1451707 (Counterclockwise)
Preceding gene: 120610014
Following gene: 120610012
Centisome position: 27.14
GC content: 67.72
Gene sequence:
>858_bases ATGAAACTCTGCGGCTTCGACGTCGGCCTCGACCGGCCCTTCTTCCTCATCGCGGGTCCCTGCGTCATCGAGTCCGAGCA GCTGCAGATGGACGTGGCCGGCCGCCTGAAGGAAACCACGGCGGCGCTGGGCATCCCGTTCATCTTCAAGAGCAGCTTCG ACAAGGCCAACCGGTCGTCGGGCACGAGCTTCCGCGGCCCCGGCCGCGAGAAGGGCCTGGAGATCCTGGCCAAGATCCGC CGCGAACTGAACGTGCCCGTGCTGACCGACGTGCACACCGAGGACGACATCACCGAGGCCGCGAAGGTGGTGGACGTGCT GCAGACGCCCGCGTTCCTGTGCCGCCAGACCGACTTCATCCGCGCCGTGGCGCAGTCGGGCAAGCCGGTCAACATCAAGA AGGGCCAGTTCCTCGCACCCCACGACATGAAGAACGTCATCGACAAGGCCCGCGCCGCCGCGCGCGAGAAGGGCCTGCCG GAAGACAGCTTCATGGCCTGCGAGCGCGGCGCGAGCTTCGGCTACAACAACCTCGTCTCCGACATGCGCGGCCTCGCCAT CATGCGCGAGACGGGCGCGCCCGTGGTGTTCGACGCCACGCACAGCGTGCAGCTGCCGGGCGGCCAGGGCACCAGCAGCG GCGGCCAGCGCGAGATGGTGCCGGTGCTGGCACGCGCGGCCGTGGCCGTGGGCGTGGCCGGCCTCTTCATGGAAACGCAC CCCGATCCCTGCAACGCCCTCTCGGACGGGCCCAACGCAGTGCCGCTCAAGCACATGAAGGCGCTGCTGGAAACCCTCGT CGCCCTGGATTCCGTCACCAAGCGGAATGGCTTTCTCGAAAACGACTTCGGAGCTTGA
Upstream 100 bases:
>100_bases TCATCAAGGCGGCGATCGACCACCAGAAGAGCCGCCAGCCCACCCTGCCCGCCGCCGCTGCCTCCTGAGGCGTCGGCGCT TTCCCCCCAAGGCACCTTCC
Downstream 100 bases:
>100_bases GACATCCCATGAGCAGTGCCTACATCATCGCGTCCGTCACCGTCACCAACCCCGAACAGTACGAAGACTACCGCCGCCTC AGCACGCAGGCCATGCAGGT
Product: 2-dehydro-3-deoxyphosphooctonate aldolase
Products: NA
Alternate protein names: 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; KDO-8-phosphate synthase; KDO 8-P synthase; KDOPS; Phospho-2-dehydro-3-deoxyoctonate aldolase
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MKLCGFDVGLDRPFFLIAGPCVIESEQLQMDVAGRLKETTAALGIPFIFKSSFDKANRSSGTSFRGPGREKGLEILAKIR RELNVPVLTDVHTEDDITEAAKVVDVLQTPAFLCRQTDFIRAVAQSGKPVNIKKGQFLAPHDMKNVIDKARAAAREKGLP EDSFMACERGASFGYNNLVSDMRGLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREMVPVLARAAVAVGVAGLFMETH PDPCNALSDGPNAVPLKHMKALLETLVALDSVTKRNGFLENDFGA
Sequences:
>Translated_285_residues MKLCGFDVGLDRPFFLIAGPCVIESEQLQMDVAGRLKETTAALGIPFIFKSSFDKANRSSGTSFRGPGREKGLEILAKIR RELNVPVLTDVHTEDDITEAAKVVDVLQTPAFLCRQTDFIRAVAQSGKPVNIKKGQFLAPHDMKNVIDKARAAAREKGLP EDSFMACERGASFGYNNLVSDMRGLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREMVPVLARAAVAVGVAGLFMETH PDPCNALSDGPNAVPLKHMKALLETLVALDSVTKRNGFLENDFGA >Mature_285_residues MKLCGFDVGLDRPFFLIAGPCVIESEQLQMDVAGRLKETTAALGIPFIFKSSFDKANRSSGTSFRGPGREKGLEILAKIR RELNVPVLTDVHTEDDITEAAKVVDVLQTPAFLCRQTDFIRAVAQSGKPVNIKKGQFLAPHDMKNVIDKARAAAREKGLP EDSFMACERGASFGYNNLVSDMRGLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREMVPVLARAAVAVGVAGLFMETH PDPCNALSDGPNAVPLKHMKALLETLVALDSVTKRNGFLENDFGA
Specific function: Synthesis Of Kdo 8-P Which Is Required For Lipid A Maturation And Cellular Growth. [C]
COG id: COG2877
COG function: function code M; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the kdsA family
Homologues:
Organism=Escherichia coli, GI1787466, Length=279, Percent_Identity=45.8781362007168, Blast_Score=250, Evalue=8e-68,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): KDSA_ACIAC (A1TLS9)
Other databases:
- EMBL: CP000512 - RefSeq: YP_969691.1 - ProteinModelPortal: A1TLS9 - SMR: A1TLS9 - STRING: A1TLS9 - GeneID: 4666964 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_1326 - NMPDR: fig|397945.5.peg.1167 - eggNOG: COG2877 - HOGENOM: HBG575990 - OMA: GVFLECH - PhylomeDB: A1TLS9 - ProtClustDB: PRK05198 - BioCyc: AAVE397945:AAVE_1326-MONOMER - GO: GO:0005737 - HAMAP: MF_00056 - InterPro: IPR013785 - InterPro: IPR006218 - InterPro: IPR006269 - Gene3D: G3DSA:3.20.20.70 - PANTHER: PTHR21057:SF2 - TIGRFAMs: TIGR01362
Pfam domain/function: PF00793 DAHP_synth_1
EC number: =2.5.1.55
Molecular weight: Translated: 30585; Mature: 30585
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLCGFDVGLDRPFFLIAGPCVIESEQLQMDVAGRLKETTAALGIPFIFKSSFDKANRSS CCCCCCCCCCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC GTSFRGPGREKGLEILAKIRRELNVPVLTDVHTEDDITEAAKVVDVLQTPAFLCRQTDFI CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RAVAQSGKPVNIKKGQFLAPHDMKNVIDKARAAAREKGLPEDSFMACERGASFGYNNLVS HHHHHCCCCCEECCCCEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH DMRGLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREMVPVLARAAVAVGVAGLFMETH HHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PDPCNALSDGPNAVPLKHMKALLETLVALDSVTKRNGFLENDFGA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKLCGFDVGLDRPFFLIAGPCVIESEQLQMDVAGRLKETTAALGIPFIFKSSFDKANRSS CCCCCCCCCCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC GTSFRGPGREKGLEILAKIRRELNVPVLTDVHTEDDITEAAKVVDVLQTPAFLCRQTDFI CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RAVAQSGKPVNIKKGQFLAPHDMKNVIDKARAAAREKGLPEDSFMACERGASFGYNNLVS HHHHHCCCCCEECCCCEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH DMRGLAIMRETGAPVVFDATHSVQLPGGQGTSSGGQREMVPVLARAAVAVGVAGLFMETH HHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PDPCNALSDGPNAVPLKHMKALLETLVALDSVTKRNGFLENDFGA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA