Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yuxH [H]
Identifier: 120610002
GI number: 120610002
Start: 1442339
End: 1443688
Strand: Reverse
Name: yuxH [H]
Synonym: Aave_1315
Alternate gene names: 120610002
Gene position: 1443688-1442339 (Counterclockwise)
Preceding gene: 120610003
Following gene: 120609996
Centisome position: 26.97
GC content: 66.59
Gene sequence:
>1350_bases ATGGTAAGGTGGCGACCTGCCAAGGGCCCACCCGCCCGGTCATCCATTCTCCTCACGCCCATGTCGAGCAATAACGAAAA CGCACCCGCTTTCGAGTCCACCCAGCCCCAGGAAGGCGCGGCGATGGACGAGGCCAACCTCGCCATCATCGCGCGCCAGG CCATCGTGGACGAGCACCGCGCCGTCTTCGGCTACGAGCTCTTCGACCGCTCCACCGCCTCCGACGCGCACACGGCCGCC AGCGATGCCGCCCTGCTCTTCAATGCGCTCTCATACGCGGGCACCGAGGCCCTGGTGGGCAAGAAGACGGTGTTCATCAA CTGCACCCATGAGAGCCTCGCGGGCGGCCACCTGGAGCTCATCCATCCCGAGAAGGTCGTGCTGGAGGTTCCCACGCTGC CGGACACGGCCGGCGTGGAGGAGATCGAAGGCCGCCTGTCCACCCTCGAAGGGCTGCGGGCCCGGGGCTTTCGCCTCGCC TTCAACCAGAACGTGCTGCGCCGCAACTACGGCAGCTGGCTGCGGATGGCCGCTTTCGTGAAGCTCGACATGCAGGCCTT CCGGCCCGAACTGGCCGAGCCGCTCGTGAAGTTCGCACGTGCCAACAGCCAAGCCACGCTGGTCGCCGAGAAAGTGGAAA CCGCCGAGCAGCACGAGCGCATGGCCGCGCTGGGCGTGAAGCTGTTCCAGGGTTTCTGGTTCGCCAAGCCCGCACTCGTC AAGGCCCAGACCATACGGCCGTCGCAGGCCACGATCATCCAGCTCATCAACCTGGTGCGCAAACAGGCGAGCACCGCGGA AATCGAAGACCTGCTCAAGAAGGACCCCACGCTGTCCTTCAACCTGCTGCGCTTCATCAACTCCTCCGGCTTCGGACTGT CCTGCGAGATCACCTCGTTCCGGCATGCGGTCATGATCCTCGGCCTCAAGAAGCTCTTCCGCTGGGCGGCGCTGCTGATG ACCACTTCGCGCGCGGGCGGCTCGCCGCCGGCCGTGGGCCAGACGGCCGTCGTGCGCGGGCGCCTGATGGAACTGCTGGC CGCCGAACTGCTGCCACCCGAAGAGTGCGACAACGCCTTCGTGGTGGGCGTGTTCTCGCTGCTGGACACCATGCTCGGCG TGCCGCTGGAAAAGGCCCTCGAATCGGTGGCCCTGCCGCAGCCGGTGATCGATGCGCTGCTGCACAACACCGGCGTGTTC GCGCCGTTCCTCGACCTCACCAAGGCCTGCGAAAGCGGTGACGAAGTGGCGTTCGCCAAGGCCGCCGAGGCGCTGCACCT CTCGAACCGTCAGGTCAACTGGGCCCACCTGCAGGCCCTGACCTGGGCCGAAAGCCTGGGCGAAGGCTGA
Upstream 100 bases:
>100_bases CGGACTGAGCCGATGCCCCCGCGCCAGCGCGCCATGCCGTTCCGCCCATGCCCTCGCGCATGCCGGCCGGCCGGAAGCAG GCTTGCAGGCGCTTTCCTTG
Downstream 100 bases:
>100_bases CCCGGCGCGGTCCTGGAGCGGCCATCGCGACCCAGCGAAGCGGTTGCGGCGAGGCGCCGCGTCGCAGGCAGTACACGTAG TACGACAAGATGCGGCAGCG
Product: diguanylate phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MVRWRPAKGPPARSSILLTPMSSNNENAPAFESTQPQEGAAMDEANLAIIARQAIVDEHRAVFGYELFDRSTASDAHTAA SDAALLFNALSYAGTEALVGKKTVFINCTHESLAGGHLELIHPEKVVLEVPTLPDTAGVEEIEGRLSTLEGLRARGFRLA FNQNVLRRNYGSWLRMAAFVKLDMQAFRPELAEPLVKFARANSQATLVAEKVETAEQHERMAALGVKLFQGFWFAKPALV KAQTIRPSQATIIQLINLVRKQASTAEIEDLLKKDPTLSFNLLRFINSSGFGLSCEITSFRHAVMILGLKKLFRWAALLM TTSRAGGSPPAVGQTAVVRGRLMELLAAELLPPEECDNAFVVGVFSLLDTMLGVPLEKALESVALPQPVIDALLHNTGVF APFLDLTKACESGDEVAFAKAAEALHLSNRQVNWAHLQALTWAESLGEG
Sequences:
>Translated_449_residues MVRWRPAKGPPARSSILLTPMSSNNENAPAFESTQPQEGAAMDEANLAIIARQAIVDEHRAVFGYELFDRSTASDAHTAA SDAALLFNALSYAGTEALVGKKTVFINCTHESLAGGHLELIHPEKVVLEVPTLPDTAGVEEIEGRLSTLEGLRARGFRLA FNQNVLRRNYGSWLRMAAFVKLDMQAFRPELAEPLVKFARANSQATLVAEKVETAEQHERMAALGVKLFQGFWFAKPALV KAQTIRPSQATIIQLINLVRKQASTAEIEDLLKKDPTLSFNLLRFINSSGFGLSCEITSFRHAVMILGLKKLFRWAALLM TTSRAGGSPPAVGQTAVVRGRLMELLAAELLPPEECDNAFVVGVFSLLDTMLGVPLEKALESVALPQPVIDALLHNTGVF APFLDLTKACESGDEVAFAKAAEALHLSNRQVNWAHLQALTWAESLGEG >Mature_449_residues MVRWRPAKGPPARSSILLTPMSSNNENAPAFESTQPQEGAAMDEANLAIIARQAIVDEHRAVFGYELFDRSTASDAHTAA SDAALLFNALSYAGTEALVGKKTVFINCTHESLAGGHLELIHPEKVVLEVPTLPDTAGVEEIEGRLSTLEGLRARGFRLA FNQNVLRRNYGSWLRMAAFVKLDMQAFRPELAEPLVKFARANSQATLVAEKVETAEQHERMAALGVKLFQGFWFAKPALV KAQTIRPSQATIIQLINLVRKQASTAEIEDLLKKDPTLSFNLLRFINSSGFGLSCEITSFRHAVMILGLKKLFRWAALLM TTSRAGGSPPAVGQTAVVRGRLMELLAAELLPPEECDNAFVVGVFSLLDTMLGVPLEKALESVALPQPVIDALLHNTGVF APFLDLTKACESGDEVAFAKAAEALHLSNRQVNWAHLQALTWAESLGEG
Specific function: Unknown
COG id: COG3434
COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 EAL domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014408 - InterPro: IPR001633 - InterPro: IPR013976 [H]
Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]
EC number: NA
Molecular weight: Translated: 48832; Mature: 48832
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRWRPAKGPPARSSILLTPMSSNNENAPAFESTQPQEGAAMDEANLAIIARQAIVDEHR CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AVFGYELFDRSTASDAHTAASDAALLFNALSYAGTEALVGKKTVFINCTHESLAGGHLEL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEECHHHHCCCCEEE IHPEKVVLEVPTLPDTAGVEEIEGRLSTLEGLRARGFRLAFNQNVLRRNYGSWLRMAAFV ECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHH KLDMQAFRPELAEPLVKFARANSQATLVAEKVETAEQHERMAALGVKLFQGFWFAKPALV HHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHE KAQTIRPSQATIIQLINLVRKQASTAEIEDLLKKDPTLSFNLLRFINSSGFGLSCEITSF EECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEHHHH RHAVMILGLKKLFRWAALLMTTSRAGGSPPAVGQTAVVRGRLMELLAAELLPPEECDNAF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHH VVGVFSLLDTMLGVPLEKALESVALPQPVIDALLHNTGVFAPFLDLTKACESGDEVAFAK HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH AAEALHLSNRQVNWAHLQALTWAESLGEG HHHHHHHCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MVRWRPAKGPPARSSILLTPMSSNNENAPAFESTQPQEGAAMDEANLAIIARQAIVDEHR CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AVFGYELFDRSTASDAHTAASDAALLFNALSYAGTEALVGKKTVFINCTHESLAGGHLEL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEECHHHHCCCCEEE IHPEKVVLEVPTLPDTAGVEEIEGRLSTLEGLRARGFRLAFNQNVLRRNYGSWLRMAAFV ECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHH KLDMQAFRPELAEPLVKFARANSQATLVAEKVETAEQHERMAALGVKLFQGFWFAKPALV HHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHE KAQTIRPSQATIIQLINLVRKQASTAEIEDLLKKDPTLSFNLLRFINSSGFGLSCEITSF EECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEHHHH RHAVMILGLKKLFRWAALLMTTSRAGGSPPAVGQTAVVRGRLMELLAAELLPPEECDNAF HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHH VVGVFSLLDTMLGVPLEKALESVALPQPVIDALLHNTGVFAPFLDLTKACESGDEVAFAK HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH AAEALHLSNRQVNWAHLQALTWAESLGEG HHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2507523; 9274030; 9384377; 1943994 [H]