Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yuxH [H]

Identifier: 120610003

GI number: 120610003

Start: 1443781

End: 1445040

Strand: Reverse

Name: yuxH [H]

Synonym: Aave_1316

Alternate gene names: 120610003

Gene position: 1445040-1443781 (Counterclockwise)

Preceding gene: 120610004

Following gene: 120610002

Centisome position: 27.0

GC content: 67.78

Gene sequence:

>1260_bases
ATGCATCCCAACCCACCCACCATGACCCCCCAGGGACCGGCCGGCACCGCGCCGGGCGCCATGATCGCCCGGCAGGCGAT
CGTCAACGGCCAGCACTCCGTGATCGGCTACGAGCTGTTCAACCGGTCGCGCGCGGGCGTGGCGCACACCGCGGCCACCG
ACGTCTTCCTCGTCTTCACGGCCCTGTCGCACGCAGGCACCGAAGAGCTGGTGGGCAAGAAGCTCATCTTCGTCAATTGC
ACGCACGAAAGCCTGGCGGGCGGCCACCTCGAACTGGTGGACCCGGACAAGGTGGTGCTGGAGATCCCGCCGCTCGGCCA
TGCGGCCGCCGCCGAGGTCGGCACCCGCCTGCCGATCCTGCAGGCGCTGCGCGAGCGGGGGTTCCACCTGGCGTTCAACC
ACACCGTGCTGGAATCCGCCTACGCTCCCTGGCTGCCGCTGGCCGACTACATCAAGCTCGACCTTTCCCTGCTGGCGCCC
GAACAGCTCGCGGTGCTCGTCAAGTACGCCGGACGTCACTCGCGCGCCGAACTCATCGCGGAAAAGGTGGAAACCGCGCA
GCAGTACGACATGGGGTCCGGCATGGGCGTGCAGCTCTTCCAGGGTTTCTGGTTCTCGCGCCCCTCGGTGGTCGAGGCCA
AGCTGCTCACTCCGTCGCAGACCAACATCCTCCACCTGATCAACCTCGTGCGGCAGCAGGCCAGCACCGACGAGATCGAG
GAAGTCCTCAAGAAGGACGCGGGCCTGGCCTTCAACCTGATGCGGCTCATCAATTCGTCCGGCTTCGGCCTGACCCGCGA
AATCACCTCGTTCCGCCAGGCGGTCATGCTGATGGGCCTGAAGAAGCTCTTCCGCTGGGCCGCGCTGCTGCTGACCGCGT
CGCGGATCGGCGGCATACCCGCGGCCGTGGGCCACACGGCCGTGGTCCGCGGGCGGCTGATGGAACTGATCGCCCAGGAA
ACGCTGTCCCAGGAAGACGCAGACCAGGCCTTCGTCGTGGGCATCTTCTCGATGCTGGACGTGATGCTCAGCATGCCGAT
GGAGTCTGCTGTCGGGTTGCTGCACGTGCCCGACTCCGTGGCCGCCGCCCTGCTGCGCCGCGAAGGCGTCCTCGGAGAGT
TGCTGCGCCTCGCCGAAGCCTGCGAGTCGAGCGACGACGCCCTCTTCGACCAGGCGGCCACCACCCTGCACCTCGCCAGC
CAGCAGATCAACTGGGCCCACCTGCAGGCCCTGGCCTGGGCCGACCAGATGGCGGACTGA

Upstream 100 bases:

>100_bases
CAATCCGAATGACGGAGAGCAACCGGGGACACGGGGAATTTTCTACAATGACCCAGCCCGCACCGCACGCCGCGGGGCGG
CTTTCGTCCACGCATCCGGC

Downstream 100 bases:

>100_bases
GCCGATGCCCCCGCGCCAGCGCGCCATGCCGTTCCGCCCATGCCCTCGCGCATGCCGGCCGGCCGGAAGCAGGCTTGCAG
GCGCTTTCCTTGATGGTAAG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFTALSHAGTEELVGKKLIFVNC
THESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPILQALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAP
EQLAVLVKYAGRHSRAELIAEKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE
EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIPAAVGHTAVVRGRLMELIAQE
TLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSVAAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLAS
QQINWAHLQALAWADQMAD

Sequences:

>Translated_419_residues
MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFTALSHAGTEELVGKKLIFVNC
THESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPILQALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAP
EQLAVLVKYAGRHSRAELIAEKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE
EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIPAAVGHTAVVRGRLMELIAQE
TLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSVAAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLAS
QQINWAHLQALAWADQMAD
>Mature_419_residues
MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFTALSHAGTEELVGKKLIFVNC
THESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPILQALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAP
EQLAVLVKYAGRHSRAELIAEKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE
EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIPAAVGHTAVVRGRLMELIAQE
TLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSVAAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLAS
QQINWAHLQALAWADQMAD

Specific function: Unknown

COG id: COG3434

COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014408
- InterPro:   IPR001633
- InterPro:   IPR013976 [H]

Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]

EC number: NA

Molecular weight: Translated: 45339; Mature: 45339

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
ALSHAGTEELVGKKLIFVNCTHESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPIL
HHHHCCHHHHHCCEEEEEEECHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHCCCCHHH
QALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAPEQLAVLVKYAGRHSRAELIA
HHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
EKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHH
EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIP
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AAVGHTAVVRGRLMELIAQETLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCEEECCHHH
AAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLASQQINWAHLQALAWADQMAD
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFT
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHH
ALSHAGTEELVGKKLIFVNCTHESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPIL
HHHHCCHHHHHCCEEEEEEECHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHCCCCHHH
QALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAPEQLAVLVKYAGRHSRAELIA
HHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH
EKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHH
EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIP
HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AAVGHTAVVRGRLMELIAQETLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCEEECCHHH
AAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLASQQINWAHLQALAWADQMAD
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2507523; 9274030; 9384377; 1943994 [H]