Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yuxH [H]
Identifier: 120610003
GI number: 120610003
Start: 1443781
End: 1445040
Strand: Reverse
Name: yuxH [H]
Synonym: Aave_1316
Alternate gene names: 120610003
Gene position: 1445040-1443781 (Counterclockwise)
Preceding gene: 120610004
Following gene: 120610002
Centisome position: 27.0
GC content: 67.78
Gene sequence:
>1260_bases ATGCATCCCAACCCACCCACCATGACCCCCCAGGGACCGGCCGGCACCGCGCCGGGCGCCATGATCGCCCGGCAGGCGAT CGTCAACGGCCAGCACTCCGTGATCGGCTACGAGCTGTTCAACCGGTCGCGCGCGGGCGTGGCGCACACCGCGGCCACCG ACGTCTTCCTCGTCTTCACGGCCCTGTCGCACGCAGGCACCGAAGAGCTGGTGGGCAAGAAGCTCATCTTCGTCAATTGC ACGCACGAAAGCCTGGCGGGCGGCCACCTCGAACTGGTGGACCCGGACAAGGTGGTGCTGGAGATCCCGCCGCTCGGCCA TGCGGCCGCCGCCGAGGTCGGCACCCGCCTGCCGATCCTGCAGGCGCTGCGCGAGCGGGGGTTCCACCTGGCGTTCAACC ACACCGTGCTGGAATCCGCCTACGCTCCCTGGCTGCCGCTGGCCGACTACATCAAGCTCGACCTTTCCCTGCTGGCGCCC GAACAGCTCGCGGTGCTCGTCAAGTACGCCGGACGTCACTCGCGCGCCGAACTCATCGCGGAAAAGGTGGAAACCGCGCA GCAGTACGACATGGGGTCCGGCATGGGCGTGCAGCTCTTCCAGGGTTTCTGGTTCTCGCGCCCCTCGGTGGTCGAGGCCA AGCTGCTCACTCCGTCGCAGACCAACATCCTCCACCTGATCAACCTCGTGCGGCAGCAGGCCAGCACCGACGAGATCGAG GAAGTCCTCAAGAAGGACGCGGGCCTGGCCTTCAACCTGATGCGGCTCATCAATTCGTCCGGCTTCGGCCTGACCCGCGA AATCACCTCGTTCCGCCAGGCGGTCATGCTGATGGGCCTGAAGAAGCTCTTCCGCTGGGCCGCGCTGCTGCTGACCGCGT CGCGGATCGGCGGCATACCCGCGGCCGTGGGCCACACGGCCGTGGTCCGCGGGCGGCTGATGGAACTGATCGCCCAGGAA ACGCTGTCCCAGGAAGACGCAGACCAGGCCTTCGTCGTGGGCATCTTCTCGATGCTGGACGTGATGCTCAGCATGCCGAT GGAGTCTGCTGTCGGGTTGCTGCACGTGCCCGACTCCGTGGCCGCCGCCCTGCTGCGCCGCGAAGGCGTCCTCGGAGAGT TGCTGCGCCTCGCCGAAGCCTGCGAGTCGAGCGACGACGCCCTCTTCGACCAGGCGGCCACCACCCTGCACCTCGCCAGC CAGCAGATCAACTGGGCCCACCTGCAGGCCCTGGCCTGGGCCGACCAGATGGCGGACTGA
Upstream 100 bases:
>100_bases CAATCCGAATGACGGAGAGCAACCGGGGACACGGGGAATTTTCTACAATGACCCAGCCCGCACCGCACGCCGCGGGGCGG CTTTCGTCCACGCATCCGGC
Downstream 100 bases:
>100_bases GCCGATGCCCCCGCGCCAGCGCGCCATGCCGTTCCGCCCATGCCCTCGCGCATGCCGGCCGGCCGGAAGCAGGCTTGCAG GCGCTTTCCTTGATGGTAAG
Product: diguanylate phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFTALSHAGTEELVGKKLIFVNC THESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPILQALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAP EQLAVLVKYAGRHSRAELIAEKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIPAAVGHTAVVRGRLMELIAQE TLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSVAAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLAS QQINWAHLQALAWADQMAD
Sequences:
>Translated_419_residues MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFTALSHAGTEELVGKKLIFVNC THESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPILQALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAP EQLAVLVKYAGRHSRAELIAEKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIPAAVGHTAVVRGRLMELIAQE TLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSVAAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLAS QQINWAHLQALAWADQMAD >Mature_419_residues MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFTALSHAGTEELVGKKLIFVNC THESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPILQALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAP EQLAVLVKYAGRHSRAELIAEKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIPAAVGHTAVVRGRLMELIAQE TLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSVAAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLAS QQINWAHLQALAWADQMAD
Specific function: Unknown
COG id: COG3434
COG function: function code T; Predicted signal transduction protein containing EAL and modified HD-GYP domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 EAL domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014408 - InterPro: IPR001633 - InterPro: IPR013976 [H]
Pfam domain/function: PF00563 EAL; PF08668 HDOD [H]
EC number: NA
Molecular weight: Translated: 45339; Mature: 45339
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS50883 EAL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFT CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHH ALSHAGTEELVGKKLIFVNCTHESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPIL HHHHCCHHHHHCCEEEEEEECHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHCCCCHHH QALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAPEQLAVLVKYAGRHSRAELIA HHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH EKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHH EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIP HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AAVGHTAVVRGRLMELIAQETLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSV HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCEEECCHHH AAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLASQQINWAHLQALAWADQMAD HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MHPNPPTMTPQGPAGTAPGAMIARQAIVNGQHSVIGYELFNRSRAGVAHTAATDVFLVFT CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHH ALSHAGTEELVGKKLIFVNCTHESLAGGHLELVDPDKVVLEIPPLGHAAAAEVGTRLPIL HHHHCCHHHHHCCEEEEEEECHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHCCCCHHH QALRERGFHLAFNHTVLESAYAPWLPLADYIKLDLSLLAPEQLAVLVKYAGRHSRAELIA HHHHHCCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHH EKVETAQQYDMGSGMGVQLFQGFWFSRPSVVEAKLLTPSQTNILHLINLVRQQASTDEIE HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHH EVLKKDAGLAFNLMRLINSSGFGLTREITSFRQAVMLMGLKKLFRWAALLLTASRIGGIP HHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AAVGHTAVVRGRLMELIAQETLSQEDADQAFVVGIFSMLDVMLSMPMESAVGLLHVPDSV HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCEEECCHHH AAALLRREGVLGELLRLAEACESSDDALFDQAATTLHLASQQINWAHLQALAWADQMAD HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2507523; 9274030; 9384377; 1943994 [H]