Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120609978
Identifier: 120609978
GI number: 120609978
Start: 1417421
End: 1420021
Strand: Reverse
Name: 120609978
Synonym: Aave_1291
Alternate gene names: NA
Gene position: 1420021-1417421 (Counterclockwise)
Preceding gene: 120609980
Following gene: 120609977
Centisome position: 26.53
GC content: 74.63
Gene sequence:
>2601_bases ATGCTCGCCTTGCTCCGCACCTTTTCCTGGCAGGAACTGCGCCGCCATCCCTGGCGCACTGCGGTGGCCGTCGCCTCCGT GATGCTGGGCGTCGCCCTGGCTTTCGCGGTGCATGTGATCCATGCCTCGGCCCTCTCGGAATTCAGCCAGGCCGTGCGCG CGGCCGGCGGCCAGCCCGACCTGCAACTGCGCGCCGCGCAGGGCGACCTGCCGGAGGCGCTGTACGGCCCCGTGGCCACC CATGCCCTGGTGGCACGGGCGGGCCCCGTGCTGGAGGTCTCCGTGCAGGCCTCCGCTCCCGGGCGCGGCCCGGTGGCGCT GCGCGTGGTGGCGGCGGATGCACTCCTGCTCGGCGCCATGGCGCCGGAACTCGCGCCGCGGCCGTTCCCGGACGCGGGCC GGCTCGCCATGCTGTCGCCCGCCACGCTGTTCCTCAATGCAGCCGCGATGCAGGCCCTGGGCCTGCCGGCGGACCACGGC AGCCCGGTCACCTTGCGCCAGGGCCTGGCCGGGCACGCTGCCCGGGTGGCCGGTACGGTGGCGGCCGCCGGGCCGCCGCT GGCGGTGATGGACATCGGCGCGGCGCAGGATTTCTTTGGCCGTGCGGGCCGCCTGAGCCGCATCGACGTGCAACTGCAGC CCGGGCGGCGCGTGGAGGATTTGCAGGCAGCGCTGCCGCAGGTGCTGCAGGCCGCGGGCCTGGAGGCCGCCGATGCGGCG GGCATCGCCGTGGTGCGGCCGCAGGACACCGACCGGCGCACGGACGACCTCTCCCGTGCCTACCGGGTGAACCTGACCGT GCTGGCCCTGGTCGCGCTTTTCACCGGAGGCTACCTGGTGTTTTCCGTACTGGCACTGAGCGTGGCGCGCCGCGGTCCGC AATTCGCGCTGCTGGCGGTGCTCGGCGCCACGCCACGCATGCGGCGGGCCCTGGTGCTGGCCGAGTCCGCCGCCCTGGGG GCCGCCGGCAGCGTGGCCGGCATTGCGCTCGGCACGGGCCTGGCCGCGCTGGCGCTGCGCGCCATGGGCGGGGACCTGGG CGGGGGGTATTTCGAGGGGGTGCGTCCCTCGCTGCAGTGGAGCGCCGGCGCCGCCCTGCTGTATGCGGCGCTGGGAACCG CGGCCGCGCTGGCCGGGGGCTGGTGGCCCGCGCGCTCGGCGGAACGGCTGGCCCCGGCCGCCGCGCTCAAGGGAGCGGGC ACGGCCTCCGACATGCAGCCCCGCCTGGCACTGCCCACGCTGTGCGCCGCGGCGGGGTGCGCGCTGGCATTCGCGCCGCC GGTGGCGGGACTGCCACTGGGTGCGTACGCATCGGTCGCACTGCTGCTGGTGGGCGGCATCGGCCTGCTGCCGGTGCTGG TGCACGGGCTGTTGAGCCTGCTGGCCCCCTGGGCAGGCCGTCGCCCGCTGACCATGCTCGCCGTGGAGCGCGCCCGGCGA ATGCACGGCATGGCGGCCGTGGCGGTCGGCGGCGTGGTGGCCAGCCTGGCCCTGGCCGTGGCATTGACCGTGATGGTGGC CAGCTTCCGTGGCTCGGTGCTGCAATGGCTGGATACCGCGCTGCCCGCGCCACTGTACCTGCGCGCGGCGGGCGCCGGAG GGGGTGGTGGCGACGCGCCCTTTCCGCCGGGGTGGGACGACACCGTGGTGGAGCTGCCCGGTGTGGAACGGGCCGAGGCG CTGCGCATCGGCAGCCTGCTGCTGGATCCCTCGCGACCCGCGGTGGCGCTGCTGGCACGCTCCTTCGCGCGCGGCGCGGC TCAGACACTGCCGCTGCGCGACGCACCGCTGCCCGTGCCTCCGGGCCGTATCGCGGTGTATGTGAGCGAAGCGCTGGCCG ACCTGTACGGGGTGCGGCCGGGCACCAGCTGGCCGGCGCTGTCCCGGGCGATGGCCCTGCGCGCGCGGGGCGCCGGCCAG CCCACGGCCGAGTTCTTCGTCGCGGGCGTATGGCGCGACTATGTCCGCCAGTTCGGCGCGGTGGCCATGGAGCGCGGCGA CTACATCCGGCTCACGGGCGATGCCGGCATCGACGATCTGGCGATATGGCCTGCCCCGGGCACGGACGAGGCCGCGCTGC GCTCCGGGATCACGGCCCGGTTGCCGCAGGCGCTGCGCACAGGCGGAGAGCCCGCCATCGAGTTCAGTACCGCGCAGGCG ATCCGGGAACGCTCCCTCGCGCTGTTCGACCGCAGCTTCGCCGTGACCTACTGGCTGCAGGCCGTGGCCATCGGCATCGG CCTGTTCGGCATCGCCGCGAGCTTCTCTGCACAGGTGCTCGCGCGGCGCAAGGAACTGGGCCTGCTGTCGCACCTGGGCC TGACGCGTCCGCAGATCCTCGGCGTGGTGTCGGGCGAAGGCGCGGCATGGACCACCGCCGGGGCGGTCGCGGGCCTGGCG CTGGGCTGCGCCGTCTCGGCCGTGCTCGTCCATGTCGTGAATCCGCAGAGCTTCCACTGGACCATGGAGATGCGCATCCC CGCGGCGCGGCTGACGCTGCTGTGTTGCGCGGTCGTCGCCACCGGCACGGCGGCAGCGTGGCTTGCGTGCTACTCATCCG CGTCCCGCCATGCAGAACTTGCCCTCAGAGAAGACTGGTGA
Upstream 100 bases:
>100_bases GCATGCCGGCCGCACTGCCCATATAGGCCTGCGGCCATGCGCTTCAAGACCCCGTGCGGCCTCCCGGCACGGGCCGTGAC GGCGGCGCCACAATCGCTCC
Downstream 100 bases:
>100_bases ACCCCAAAAAGAGGGTGTCCCGTGATGCATTCGTTTCAATTTGCCGCAGAATGACTTTAATGAATAGCCATGGGGCTCCG GGGAGGACGCTCCATGACAA
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Permease Protein; Permease; ABC Transporter Membrane Protein; Abc Transporter Permease Protein
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPDLQLRAAQGDLPEALYGPVAT HALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAMAPELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHG SPVTLRQGLAGHAARVAGTVAAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAVLGATPRMRRALVLAESAALG AAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQWSAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAG TASDMQPRLALPTLCAAAGCALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAPFPPGWDDTVVELPGVERAEA LRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVPPGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQ PTAEFFVAGVWRDYVRQFGAVAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQILGVVSGEGAAWTTAGAVAGLA LGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVATGTAAAWLACYSSASRHAELALREDW
Sequences:
>Translated_866_residues MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPDLQLRAAQGDLPEALYGPVAT HALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAMAPELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHG SPVTLRQGLAGHAARVAGTVAAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAVLGATPRMRRALVLAESAALG AAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQWSAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAG TASDMQPRLALPTLCAAAGCALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAPFPPGWDDTVVELPGVERAEA LRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVPPGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQ PTAEFFVAGVWRDYVRQFGAVAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQILGVVSGEGAAWTTAGAVAGLA LGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVATGTAAAWLACYSSASRHAELALREDW >Mature_866_residues MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPDLQLRAAQGDLPEALYGPVAT HALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAMAPELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHG SPVTLRQGLAGHAARVAGTVAAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAVLGATPRMRRALVLAESAALG AAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQWSAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAG TASDMQPRLALPTLCAAAGCALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAPFPPGWDDTVVELPGVERAEA LRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVPPGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQ PTAEFFVAGVWRDYVRQFGAVAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQILGVVSGEGAAWTTAGAVAGLA LGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVATGTAAAWLACYSSASRHAELALREDW
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88907; Mature: 88907
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPD CCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LQLRAAQGDLPEALYGPVATHALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAM EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHH APELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHGSPVTLRQGLAGHAARVAGTV CHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHH AAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA HCCCCCEEEEECCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAV CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEHHH LGATPRMRRALVLAESAALGAAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQW HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC SAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAGTASDMQPRLALPTLCAAAGC CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC ALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC FPPGWDDTVVELPGVERAEALRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVP CCCCCCCCEEECCCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQPTAEFFVAGVWRDYVRQFGA CCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA HHCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHH IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE GVVSGEGAAWTTAGAVAGLALGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVA EEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHH TGTAAAWLACYSSASRHAELALREDW CCHHHHHHHHHHCCCCCCEEEEECCC >Mature Secondary Structure MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPD CCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LQLRAAQGDLPEALYGPVATHALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAM EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHH APELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHGSPVTLRQGLAGHAARVAGTV CHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHH AAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA HCCCCCEEEEECCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAV CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEHHH LGATPRMRRALVLAESAALGAAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQW HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC SAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAGTASDMQPRLALPTLCAAAGC CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC ALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC FPPGWDDTVVELPGVERAEALRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVP CCCCCCCCEEECCCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQPTAEFFVAGVWRDYVRQFGA CCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA HHCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHH IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE GVVSGEGAAWTTAGAVAGLALGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVA EEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHH TGTAAAWLACYSSASRHAELALREDW CCHHHHHHHHHHCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA