Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is 120609978

Identifier: 120609978

GI number: 120609978

Start: 1417421

End: 1420021

Strand: Reverse

Name: 120609978

Synonym: Aave_1291

Alternate gene names: NA

Gene position: 1420021-1417421 (Counterclockwise)

Preceding gene: 120609980

Following gene: 120609977

Centisome position: 26.53

GC content: 74.63

Gene sequence:

>2601_bases
ATGCTCGCCTTGCTCCGCACCTTTTCCTGGCAGGAACTGCGCCGCCATCCCTGGCGCACTGCGGTGGCCGTCGCCTCCGT
GATGCTGGGCGTCGCCCTGGCTTTCGCGGTGCATGTGATCCATGCCTCGGCCCTCTCGGAATTCAGCCAGGCCGTGCGCG
CGGCCGGCGGCCAGCCCGACCTGCAACTGCGCGCCGCGCAGGGCGACCTGCCGGAGGCGCTGTACGGCCCCGTGGCCACC
CATGCCCTGGTGGCACGGGCGGGCCCCGTGCTGGAGGTCTCCGTGCAGGCCTCCGCTCCCGGGCGCGGCCCGGTGGCGCT
GCGCGTGGTGGCGGCGGATGCACTCCTGCTCGGCGCCATGGCGCCGGAACTCGCGCCGCGGCCGTTCCCGGACGCGGGCC
GGCTCGCCATGCTGTCGCCCGCCACGCTGTTCCTCAATGCAGCCGCGATGCAGGCCCTGGGCCTGCCGGCGGACCACGGC
AGCCCGGTCACCTTGCGCCAGGGCCTGGCCGGGCACGCTGCCCGGGTGGCCGGTACGGTGGCGGCCGCCGGGCCGCCGCT
GGCGGTGATGGACATCGGCGCGGCGCAGGATTTCTTTGGCCGTGCGGGCCGCCTGAGCCGCATCGACGTGCAACTGCAGC
CCGGGCGGCGCGTGGAGGATTTGCAGGCAGCGCTGCCGCAGGTGCTGCAGGCCGCGGGCCTGGAGGCCGCCGATGCGGCG
GGCATCGCCGTGGTGCGGCCGCAGGACACCGACCGGCGCACGGACGACCTCTCCCGTGCCTACCGGGTGAACCTGACCGT
GCTGGCCCTGGTCGCGCTTTTCACCGGAGGCTACCTGGTGTTTTCCGTACTGGCACTGAGCGTGGCGCGCCGCGGTCCGC
AATTCGCGCTGCTGGCGGTGCTCGGCGCCACGCCACGCATGCGGCGGGCCCTGGTGCTGGCCGAGTCCGCCGCCCTGGGG
GCCGCCGGCAGCGTGGCCGGCATTGCGCTCGGCACGGGCCTGGCCGCGCTGGCGCTGCGCGCCATGGGCGGGGACCTGGG
CGGGGGGTATTTCGAGGGGGTGCGTCCCTCGCTGCAGTGGAGCGCCGGCGCCGCCCTGCTGTATGCGGCGCTGGGAACCG
CGGCCGCGCTGGCCGGGGGCTGGTGGCCCGCGCGCTCGGCGGAACGGCTGGCCCCGGCCGCCGCGCTCAAGGGAGCGGGC
ACGGCCTCCGACATGCAGCCCCGCCTGGCACTGCCCACGCTGTGCGCCGCGGCGGGGTGCGCGCTGGCATTCGCGCCGCC
GGTGGCGGGACTGCCACTGGGTGCGTACGCATCGGTCGCACTGCTGCTGGTGGGCGGCATCGGCCTGCTGCCGGTGCTGG
TGCACGGGCTGTTGAGCCTGCTGGCCCCCTGGGCAGGCCGTCGCCCGCTGACCATGCTCGCCGTGGAGCGCGCCCGGCGA
ATGCACGGCATGGCGGCCGTGGCGGTCGGCGGCGTGGTGGCCAGCCTGGCCCTGGCCGTGGCATTGACCGTGATGGTGGC
CAGCTTCCGTGGCTCGGTGCTGCAATGGCTGGATACCGCGCTGCCCGCGCCACTGTACCTGCGCGCGGCGGGCGCCGGAG
GGGGTGGTGGCGACGCGCCCTTTCCGCCGGGGTGGGACGACACCGTGGTGGAGCTGCCCGGTGTGGAACGGGCCGAGGCG
CTGCGCATCGGCAGCCTGCTGCTGGATCCCTCGCGACCCGCGGTGGCGCTGCTGGCACGCTCCTTCGCGCGCGGCGCGGC
TCAGACACTGCCGCTGCGCGACGCACCGCTGCCCGTGCCTCCGGGCCGTATCGCGGTGTATGTGAGCGAAGCGCTGGCCG
ACCTGTACGGGGTGCGGCCGGGCACCAGCTGGCCGGCGCTGTCCCGGGCGATGGCCCTGCGCGCGCGGGGCGCCGGCCAG
CCCACGGCCGAGTTCTTCGTCGCGGGCGTATGGCGCGACTATGTCCGCCAGTTCGGCGCGGTGGCCATGGAGCGCGGCGA
CTACATCCGGCTCACGGGCGATGCCGGCATCGACGATCTGGCGATATGGCCTGCCCCGGGCACGGACGAGGCCGCGCTGC
GCTCCGGGATCACGGCCCGGTTGCCGCAGGCGCTGCGCACAGGCGGAGAGCCCGCCATCGAGTTCAGTACCGCGCAGGCG
ATCCGGGAACGCTCCCTCGCGCTGTTCGACCGCAGCTTCGCCGTGACCTACTGGCTGCAGGCCGTGGCCATCGGCATCGG
CCTGTTCGGCATCGCCGCGAGCTTCTCTGCACAGGTGCTCGCGCGGCGCAAGGAACTGGGCCTGCTGTCGCACCTGGGCC
TGACGCGTCCGCAGATCCTCGGCGTGGTGTCGGGCGAAGGCGCGGCATGGACCACCGCCGGGGCGGTCGCGGGCCTGGCG
CTGGGCTGCGCCGTCTCGGCCGTGCTCGTCCATGTCGTGAATCCGCAGAGCTTCCACTGGACCATGGAGATGCGCATCCC
CGCGGCGCGGCTGACGCTGCTGTGTTGCGCGGTCGTCGCCACCGGCACGGCGGCAGCGTGGCTTGCGTGCTACTCATCCG
CGTCCCGCCATGCAGAACTTGCCCTCAGAGAAGACTGGTGA

Upstream 100 bases:

>100_bases
GCATGCCGGCCGCACTGCCCATATAGGCCTGCGGCCATGCGCTTCAAGACCCCGTGCGGCCTCCCGGCACGGGCCGTGAC
GGCGGCGCCACAATCGCTCC

Downstream 100 bases:

>100_bases
ACCCCAAAAAGAGGGTGTCCCGTGATGCATTCGTTTCAATTTGCCGCAGAATGACTTTAATGAATAGCCATGGGGCTCCG
GGGAGGACGCTCCATGACAA

Product: hypothetical protein

Products: NA

Alternate protein names: ABC Transporter Permease Protein; Permease; ABC Transporter Membrane Protein; Abc Transporter Permease Protein

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPDLQLRAAQGDLPEALYGPVAT
HALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAMAPELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHG
SPVTLRQGLAGHAARVAGTVAAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA
GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAVLGATPRMRRALVLAESAALG
AAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQWSAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAG
TASDMQPRLALPTLCAAAGCALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR
MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAPFPPGWDDTVVELPGVERAEA
LRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVPPGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQ
PTAEFFVAGVWRDYVRQFGAVAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA
IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQILGVVSGEGAAWTTAGAVAGLA
LGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVATGTAAAWLACYSSASRHAELALREDW

Sequences:

>Translated_866_residues
MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPDLQLRAAQGDLPEALYGPVAT
HALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAMAPELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHG
SPVTLRQGLAGHAARVAGTVAAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA
GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAVLGATPRMRRALVLAESAALG
AAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQWSAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAG
TASDMQPRLALPTLCAAAGCALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR
MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAPFPPGWDDTVVELPGVERAEA
LRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVPPGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQ
PTAEFFVAGVWRDYVRQFGAVAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA
IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQILGVVSGEGAAWTTAGAVAGLA
LGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVATGTAAAWLACYSSASRHAELALREDW
>Mature_866_residues
MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPDLQLRAAQGDLPEALYGPVAT
HALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAMAPELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHG
SPVTLRQGLAGHAARVAGTVAAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA
GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAVLGATPRMRRALVLAESAALG
AAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQWSAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAG
TASDMQPRLALPTLCAAAGCALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR
MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAPFPPGWDDTVVELPGVERAEA
LRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVPPGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQ
PTAEFFVAGVWRDYVRQFGAVAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA
IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQILGVVSGEGAAWTTAGAVAGLA
LGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVATGTAAAWLACYSSASRHAELALREDW

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 88907; Mature: 88907

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPD
CCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LQLRAAQGDLPEALYGPVATHALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAM
EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHH
APELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHGSPVTLRQGLAGHAARVAGTV
CHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHH
AAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA
HCCCCCEEEEECCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAV
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEHHH
LGATPRMRRALVLAESAALGAAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQW
HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC
SAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAGTASDMQPRLALPTLCAAAGC
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
ALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
FPPGWDDTVVELPGVERAEALRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVP
CCCCCCCCEEECCCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQPTAEFFVAGVWRDYVRQFGA
CCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
VAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA
HHCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHH
IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
GVVSGEGAAWTTAGAVAGLALGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVA
EEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHH
TGTAAAWLACYSSASRHAELALREDW
CCHHHHHHHHHHCCCCCCEEEEECCC
>Mature Secondary Structure
MLALLRTFSWQELRRHPWRTAVAVASVMLGVALAFAVHVIHASALSEFSQAVRAAGGQPD
CCHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LQLRAAQGDLPEALYGPVATHALVARAGPVLEVSVQASAPGRGPVALRVVAADALLLGAM
EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEHHHHHHHHHHH
APELAPRPFPDAGRLAMLSPATLFLNAAAMQALGLPADHGSPVTLRQGLAGHAARVAGTV
CHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHH
AAAGPPLAVMDIGAAQDFFGRAGRLSRIDVQLQPGRRVEDLQAALPQVLQAAGLEAADAA
HCCCCCEEEEECCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC
GIAVVRPQDTDRRTDDLSRAYRVNLTVLALVALFTGGYLVFSVLALSVARRGPQFALLAV
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEHHH
LGATPRMRRALVLAESAALGAAGSVAGIALGTGLAALALRAMGGDLGGGYFEGVRPSLQW
HCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC
SAGAALLYAALGTAAALAGGWWPARSAERLAPAAALKGAGTASDMQPRLALPTLCAAAGC
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
ALAFAPPVAGLPLGAYASVALLLVGGIGLLPVLVHGLLSLLAPWAGRRPLTMLAVERARR
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
MHGMAAVAVGGVVASLALAVALTVMVASFRGSVLQWLDTALPAPLYLRAAGAGGGGGDAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
FPPGWDDTVVELPGVERAEALRIGSLLLDPSRPAVALLARSFARGAAQTLPLRDAPLPVP
CCCCCCCCEEECCCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PGRIAVYVSEALADLYGVRPGTSWPALSRAMALRARGAGQPTAEFFVAGVWRDYVRQFGA
CCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
VAMERGDYIRLTGDAGIDDLAIWPAPGTDEAALRSGITARLPQALRTGGEPAIEFSTAQA
HHCCCCCEEEEECCCCCCCEEEECCCCCCHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHH
IRERSLALFDRSFAVTYWLQAVAIGIGLFGIAASFSAQVLARRKELGLLSHLGLTRPQIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
GVVSGEGAAWTTAGAVAGLALGCAVSAVLVHVVNPQSFHWTMEMRIPAARLTLLCCAVVA
EEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHH
TGTAAAWLACYSSASRHAELALREDW
CCHHHHHHHHHHCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA