Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is 120609976

Identifier: 120609976

GI number: 120609976

Start: 1415495

End: 1416424

Strand: Reverse

Name: 120609976

Synonym: Aave_1289

Alternate gene names: NA

Gene position: 1416424-1415495 (Counterclockwise)

Preceding gene: 120609977

Following gene: 120609975

Centisome position: 26.46

GC content: 71.94

Gene sequence:

>930_bases
ATGCCGAAGAAACGCCCGGGCCGTCATTGGGCCGCCACCACGCTGTGCTCCGTCCTCGCCCTGCATGCCGCAGGCGCGCT
CGCCGCGGACATCACCGTCACCCCCCCTGCGGGCGGCGGCTTCGTCGTCAAGGGGGGCAACCAGGAGCGGCTTCGCGTGC
AGGGCACGGGAGAGGTCTATGTTCCCGGCCTGTCCTCGACCGGCACGAGCAACACCCTGACCTGCTATGACGCGGGCACG
GGACAGCTCACCAGGTGCGCCCCCGGCGTGGGCGGCGGCGCGACGGGAGCCACGGGCCCCCTGGGCCCCACCGGGGCGAC
GGGCCCTGCCGGCGCCACGGGTGCGACCGGTGCCACCGGCGCGGCCGGCCCGACGGGCGCCACCGGGGTGACCGGGGCCA
CAGGACCCTCCGGAACAGGTGCTACCGGCGCCACGGGCCCGACAGGCGCCACGGGCGCTACCGGAGCCACGGGACCGACC
GGCCCGACGGGCGCCACGGGTGCAGAAGGAGCCACCGGGGCGACCGGCCCGACCGGCGCCACGGGTGTGACGGGCCCCCA
GGGCACACAGGGCCCGCAGGGTATCCAGGGCATCCAGGGTGTTCAAGGCAACACTGGAGCGACAGGTCCCACCGGGGCCA
CCGGGCCTGCAGGTACGACCGGCAATACCGGCGCGACCGGGGCCACGGGCCCGACGGGAAGCGTGGGAGCACTGACCAAG
ACCTCGGCCAACGATGTATGCGGCGGCAGCGGACTCAAGGAAGTGACGGCCACCTGCAGCGTGGGCAACGCGGTTTCGGG
TGGATGTCGCACCGATGACCCTCTGGTGAACCTGCTGACCCAGACCTACAAGAGTTCGGACAACCAATGGAAATGTTCGT
ACTCCTGCTCATCCGCGGTAAGCATCACGGCGGAGGCGTACTGCCAATAA

Upstream 100 bases:

>100_bases
CAAAGTGCAGACTGATTGCTCCCCGGCACGGGCTGGATGTCCATCTGCGTCCGGCGCGAGCCGCCAACATATCGATAGGA
AGTCAAGAGAGGGTTAAACC

Downstream 100 bases:

>100_bases
TGCACCGGTGGCGCGAAATGGCGCGCCGCTCCCGCGCAAGCGGGCAGCTGCCCAACCGCGTCCGGATGTCGTGAGCCGCC
CCCGCATCTGCCTCAACATG

Product: triple helix repeat-containing collagen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MPKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVYVPGLSSTGTSNTLTCYDAGT
GQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATGAAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPT
GPTGATGAEGATGATGPTGATGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK
TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAVSITAEAYCQ

Sequences:

>Translated_309_residues
MPKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVYVPGLSSTGTSNTLTCYDAGT
GQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATGAAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPT
GPTGATGAEGATGATGPTGATGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK
TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAVSITAEAYCQ
>Mature_308_residues
PKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVYVPGLSSTGTSNTLTCYDAGTG
QLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATGAAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPTG
PTGATGAEGATGATGPTGATGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTKT
SANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAVSITAEAYCQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI48762934, Length=162, Percent_Identity=43.8271604938272, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI111118976, Length=169, Percent_Identity=43.1952662721894, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI111118974, Length=169, Percent_Identity=43.1952662721894, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI115392133, Length=156, Percent_Identity=42.3076923076923, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI5803080, Length=167, Percent_Identity=39.5209580838323, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI73486666, Length=169, Percent_Identity=39.6449704142012, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32140760, Length=136, Percent_Identity=40.4411764705882, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI18780273, Length=165, Percent_Identity=38.1818181818182, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI65301115, Length=154, Percent_Identity=38.961038961039, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI56847616, Length=154, Percent_Identity=38.961038961039, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI110735435, Length=157, Percent_Identity=42.6751592356688, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI89363017, Length=136, Percent_Identity=42.6470588235294, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI183583553, Length=156, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI11386161, Length=160, Percent_Identity=39.375, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4502951, Length=132, Percent_Identity=45.4545454545455, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI73486664, Length=169, Percent_Identity=39.6449704142012, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI47778921, Length=136, Percent_Identity=39.7058823529412, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI98985806, Length=135, Percent_Identity=41.4814814814815, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI111118968, Length=155, Percent_Identity=38.7096774193548, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI299523257, Length=135, Percent_Identity=41.4814814814815, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI111118970, Length=155, Percent_Identity=38.7096774193548, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI111118972, Length=155, Percent_Identity=38.7096774193548, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI98985810, Length=135, Percent_Identity=41.4814814814815, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71992048, Length=145, Percent_Identity=44.8275862068966, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17569903, Length=129, Percent_Identity=44.1860465116279, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17552372, Length=134, Percent_Identity=41.044776119403, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17539078, Length=131, Percent_Identity=41.9847328244275, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17137252, Length=153, Percent_Identity=41.8300653594771, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581820, Length=168, Percent_Identity=42.2619047619048, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581822, Length=168, Percent_Identity=42.2619047619048, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24581824, Length=168, Percent_Identity=42.2619047619048, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28489; Mature: 28358

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVY
CCCCCCCCHHHHHHHHHHHHHHHHCCEEECEEECCCCCCCEEEECCCCCEEEEECCCCEE
VPGLSSTGTSNTLTCYDAGTGQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATG
ECCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPTGPTGATGAEGATGATGPTGA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAV
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEE
SITAEAYCQ
EEEEHHHCC
>Mature Secondary Structure 
PKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVY
CCCCCCCHHHHHHHHHHHHHHHHCCEEECEEECCCCCCCEEEECCCCCEEEEECCCCEE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EEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA