Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is 120609976
Identifier: 120609976
GI number: 120609976
Start: 1415495
End: 1416424
Strand: Reverse
Name: 120609976
Synonym: Aave_1289
Alternate gene names: NA
Gene position: 1416424-1415495 (Counterclockwise)
Preceding gene: 120609977
Following gene: 120609975
Centisome position: 26.46
GC content: 71.94
Gene sequence:
>930_bases ATGCCGAAGAAACGCCCGGGCCGTCATTGGGCCGCCACCACGCTGTGCTCCGTCCTCGCCCTGCATGCCGCAGGCGCGCT CGCCGCGGACATCACCGTCACCCCCCCTGCGGGCGGCGGCTTCGTCGTCAAGGGGGGCAACCAGGAGCGGCTTCGCGTGC AGGGCACGGGAGAGGTCTATGTTCCCGGCCTGTCCTCGACCGGCACGAGCAACACCCTGACCTGCTATGACGCGGGCACG GGACAGCTCACCAGGTGCGCCCCCGGCGTGGGCGGCGGCGCGACGGGAGCCACGGGCCCCCTGGGCCCCACCGGGGCGAC GGGCCCTGCCGGCGCCACGGGTGCGACCGGTGCCACCGGCGCGGCCGGCCCGACGGGCGCCACCGGGGTGACCGGGGCCA CAGGACCCTCCGGAACAGGTGCTACCGGCGCCACGGGCCCGACAGGCGCCACGGGCGCTACCGGAGCCACGGGACCGACC GGCCCGACGGGCGCCACGGGTGCAGAAGGAGCCACCGGGGCGACCGGCCCGACCGGCGCCACGGGTGTGACGGGCCCCCA GGGCACACAGGGCCCGCAGGGTATCCAGGGCATCCAGGGTGTTCAAGGCAACACTGGAGCGACAGGTCCCACCGGGGCCA CCGGGCCTGCAGGTACGACCGGCAATACCGGCGCGACCGGGGCCACGGGCCCGACGGGAAGCGTGGGAGCACTGACCAAG ACCTCGGCCAACGATGTATGCGGCGGCAGCGGACTCAAGGAAGTGACGGCCACCTGCAGCGTGGGCAACGCGGTTTCGGG TGGATGTCGCACCGATGACCCTCTGGTGAACCTGCTGACCCAGACCTACAAGAGTTCGGACAACCAATGGAAATGTTCGT ACTCCTGCTCATCCGCGGTAAGCATCACGGCGGAGGCGTACTGCCAATAA
Upstream 100 bases:
>100_bases CAAAGTGCAGACTGATTGCTCCCCGGCACGGGCTGGATGTCCATCTGCGTCCGGCGCGAGCCGCCAACATATCGATAGGA AGTCAAGAGAGGGTTAAACC
Downstream 100 bases:
>100_bases TGCACCGGTGGCGCGAAATGGCGCGCCGCTCCCGCGCAAGCGGGCAGCTGCCCAACCGCGTCCGGATGTCGTGAGCCGCC CCCGCATCTGCCTCAACATG
Product: triple helix repeat-containing collagen
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MPKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVYVPGLSSTGTSNTLTCYDAGT GQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATGAAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPT GPTGATGAEGATGATGPTGATGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAVSITAEAYCQ
Sequences:
>Translated_309_residues MPKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVYVPGLSSTGTSNTLTCYDAGT GQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATGAAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPT GPTGATGAEGATGATGPTGATGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAVSITAEAYCQ >Mature_308_residues PKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVYVPGLSSTGTSNTLTCYDAGTG QLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATGAAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPTG PTGATGAEGATGATGPTGATGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTKT SANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAVSITAEAYCQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48762934, Length=162, Percent_Identity=43.8271604938272, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI111118976, Length=169, Percent_Identity=43.1952662721894, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI111118974, Length=169, Percent_Identity=43.1952662721894, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI115392133, Length=156, Percent_Identity=42.3076923076923, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI5803080, Length=167, Percent_Identity=39.5209580838323, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI73486666, Length=169, Percent_Identity=39.6449704142012, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI32140760, Length=136, Percent_Identity=40.4411764705882, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI18780273, Length=165, Percent_Identity=38.1818181818182, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI65301115, Length=154, Percent_Identity=38.961038961039, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI56847616, Length=154, Percent_Identity=38.961038961039, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI110735435, Length=157, Percent_Identity=42.6751592356688, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI89363017, Length=136, Percent_Identity=42.6470588235294, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI183583553, Length=156, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI11386161, Length=160, Percent_Identity=39.375, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4502951, Length=132, Percent_Identity=45.4545454545455, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI73486664, Length=169, Percent_Identity=39.6449704142012, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI47778921, Length=136, Percent_Identity=39.7058823529412, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI98985806, Length=135, Percent_Identity=41.4814814814815, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI111118968, Length=155, Percent_Identity=38.7096774193548, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI299523257, Length=135, Percent_Identity=41.4814814814815, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI111118970, Length=155, Percent_Identity=38.7096774193548, Blast_Score=65, Evalue=9e-11, Organism=Homo sapiens, GI111118972, Length=155, Percent_Identity=38.7096774193548, Blast_Score=65, Evalue=9e-11, Organism=Homo sapiens, GI98985810, Length=135, Percent_Identity=41.4814814814815, Blast_Score=65, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71992048, Length=145, Percent_Identity=44.8275862068966, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17569903, Length=129, Percent_Identity=44.1860465116279, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17552372, Length=134, Percent_Identity=41.044776119403, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17539078, Length=131, Percent_Identity=41.9847328244275, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI17137252, Length=153, Percent_Identity=41.8300653594771, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581820, Length=168, Percent_Identity=42.2619047619048, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581822, Length=168, Percent_Identity=42.2619047619048, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24581824, Length=168, Percent_Identity=42.2619047619048, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28489; Mature: 28358
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVY CCCCCCCCHHHHHHHHHHHHHHHHCCEEECEEECCCCCCCEEEECCCCCEEEEECCCCEE VPGLSSTGTSNTLTCYDAGTGQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATG ECCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPTGPTGATGAEGATGATGPTGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAV CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEE SITAEAYCQ EEEEHHHCC >Mature Secondary Structure PKKRPGRHWAATTLCSVLALHAAGALAADITVTPPAGGGFVVKGGNQERLRVQGTGEVY CCCCCCCHHHHHHHHHHHHHHHHCCEEECEEECCCCCCCEEEECCCCCEEEEECCCCEE VPGLSSTGTSNTLTCYDAGTGQLTRCAPGVGGGATGATGPLGPTGATGPAGATGATGATG ECCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AAGPTGATGVTGATGPSGTGATGATGPTGATGATGATGPTGPTGATGAEGATGATGPTGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TGVTGPQGTQGPQGIQGIQGVQGNTGATGPTGATGPAGTTGNTGATGATGPTGSVGALTK CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE TSANDVCGGSGLKEVTATCSVGNAVSGGCRTDDPLVNLLTQTYKSSDNQWKCSYSCSSAV CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEE SITAEAYCQ EEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA