Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is livM [H]
Identifier: 120609972
GI number: 120609972
Start: 1410855
End: 1411835
Strand: Direct
Name: livM [H]
Synonym: Aave_1285
Alternate gene names: 120609972
Gene position: 1410855-1411835 (Clockwise)
Preceding gene: 120609971
Following gene: 120609979
Centisome position: 26.36
GC content: 67.48
Gene sequence:
>981_bases ATGCACCACAAGAATCTCGCCACCTTCGGCTACGGCCTGCTGCTGCTGGGCCTGATCGCCGCGCCGTTCCTCGGCGCCTA TCCGGTCTTCGTGATGAAGCTGCTGTGCTTCGCGCTGTTCGCTTCCGCCTTCAACCTGCTGCTGGGCTACACGGGGCTGC TGTCCTTCGGCCATGCCGCCTTCCTGGGCGGCGCGGCCTACGTCACCGGCCATGCGATCAAGGTCTGGGGCCTCACGCCC GAGATCGGGCTGGTGCTGGGCACGGCCGGCGGCGCGCTGCTGGGCCTGCTGTTCGGCTGGCTGGCCATCCGCCGCCAGGG CATCTACTTCTCGATGATCACGCTGGCGCTCGCGCAGATGCTGTTCTTCGCCTGCCTGCAGGCACCGTTCACGGGCGGCG AGGACGGCCTGCAGGGCGTGCCGCGCGGCAAGCTGTTCGGCGTGCTCGACCTGTCCAGCGACGTGACGATGTACTACGTG GCACTGGCCGTGGTGGTGGCGGCCTTCCTGCTGATCGTGCGCACCATCCATTCGCCGTTCGGCCAGGTGCTCAAGGGCAT CAAGGAAAACGAGCCGCGCGCCATCTCGCTGGGCTACGACACGCAGCGCTTCAAGCTGCTGGCCTTCGTGATCTCGGCCG CCATCGCGGGGCTGGCCGGTTCGCTCAAGACGCTGGTGCTGGGCTTCGCCACGCTGTCGGACGTGCACTGGACGGCCTCG GGCCAGGTGATCCTGATGACCCTCGTCGGCGGCCTGGGCACGCTGTCCGGCCCGCTGGTCGGCTCCGCCGTGGTGGTGCT GCTGGAGAACAAGATCGGCGAATTCGGCAACCTGCTCGCGTCCCTCACGGGCGTGGACTGGTTCCGCACGCTGGGCGAAT CGGTGACCATCGTCACGGGCCTGATCTTCGTGGTCTGCGTGCTCGCGTTCCGCCGCGGGATCATGGGGGAGATCCTGGCG AGAATTAGGAAAACCCCCTGA
Upstream 100 bases:
>100_bases GCATCGTCCACCGTGGTGTTCGTCATCATGGTGGTGGTGCTGCTCATCCGCCCCGCCGGCCTGTTCGGCAAGGAAAAGTG ACCAGGACGGGGCCGCGCAC
Downstream 100 bases:
>100_bases GTCGCCAGAGGCGCCTCCGTGCAGCCGCCAGAGGCGGCAGCTCTTCAGGCACGTCCAGGCCTGCGCAGGCAGGCCCGGAG CCGCAGCCCTCAGCCCCGCA
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein M [H]
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MHHKNLATFGYGLLLLGLIAAPFLGAYPVFVMKLLCFALFASAFNLLLGYTGLLSFGHAAFLGGAAYVTGHAIKVWGLTP EIGLVLGTAGGALLGLLFGWLAIRRQGIYFSMITLALAQMLFFACLQAPFTGGEDGLQGVPRGKLFGVLDLSSDVTMYYV ALAVVVAAFLLIVRTIHSPFGQVLKGIKENEPRAISLGYDTQRFKLLAFVISAAIAGLAGSLKTLVLGFATLSDVHWTAS GQVILMTLVGGLGTLSGPLVGSAVVVLLENKIGEFGNLLASLTGVDWFRTLGESVTIVTGLIFVVCVLAFRRGIMGEILA RIRKTP
Sequences:
>Translated_326_residues MHHKNLATFGYGLLLLGLIAAPFLGAYPVFVMKLLCFALFASAFNLLLGYTGLLSFGHAAFLGGAAYVTGHAIKVWGLTP EIGLVLGTAGGALLGLLFGWLAIRRQGIYFSMITLALAQMLFFACLQAPFTGGEDGLQGVPRGKLFGVLDLSSDVTMYYV ALAVVVAAFLLIVRTIHSPFGQVLKGIKENEPRAISLGYDTQRFKLLAFVISAAIAGLAGSLKTLVLGFATLSDVHWTAS GQVILMTLVGGLGTLSGPLVGSAVVVLLENKIGEFGNLLASLTGVDWFRTLGESVTIVTGLIFVVCVLAFRRGIMGEILA RIRKTP >Mature_326_residues MHHKNLATFGYGLLLLGLIAAPFLGAYPVFVMKLLCFALFASAFNLLLGYTGLLSFGHAAFLGGAAYVTGHAIKVWGLTP EIGLVLGTAGGALLGLLFGWLAIRRQGIYFSMITLALAQMLFFACLQAPFTGGEDGLQGVPRGKLFGVLDLSSDVTMYYV ALAVVVAAFLLIVRTIHSPFGQVLKGIKENEPRAISLGYDTQRFKLLAFVISAAIAGLAGSLKTLVLGFATLSDVHWTAS GQVILMTLVGGLGTLSGPLVGSAVVVLLENKIGEFGNLLASLTGVDWFRTLGESVTIVTGLIFVVCVLAFRRGIMGEILA RIRKTP
Specific function: Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 34427; Mature: 34427
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHKNLATFGYGLLLLGLIAAPFLGAYPVFVMKLLCFALFASAFNLLLGYTGLLSFGHAA CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLGGAAYVTGHAIKVWGLTPEIGLVLGTAGGALLGLLFGWLAIRRQGIYFSMITLALAQM HHCCHHHHCCCEEEEECCCCCHHHEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LFFACLQAPFTGGEDGLQGVPRGKLFGVLDLSSDVTMYYVALAVVVAAFLLIVRTIHSPF HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GQVLKGIKENEPRAISLGYDTQRFKLLAFVISAAIAGLAGSLKTLVLGFATLSDVHWTAS HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCC GQVILMTLVGGLGTLSGPLVGSAVVVLLENKIGEFGNLLASLTGVDWFRTLGESVTIVTG CCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LIFVVCVLAFRRGIMGEILARIRKTP HHHHHHHHHHHHCHHHHHHHHHHCCC >Mature Secondary Structure MHHKNLATFGYGLLLLGLIAAPFLGAYPVFVMKLLCFALFASAFNLLLGYTGLLSFGHAA CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLGGAAYVTGHAIKVWGLTPEIGLVLGTAGGALLGLLFGWLAIRRQGIYFSMITLALAQM HHCCHHHHCCCEEEEECCCCCHHHEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LFFACLQAPFTGGEDGLQGVPRGKLFGVLDLSSDVTMYYVALAVVVAAFLLIVRTIHSPF HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GQVLKGIKENEPRAISLGYDTQRFKLLAFVISAAIAGLAGSLKTLVLGFATLSDVHWTAS HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCC GQVILMTLVGGLGTLSGPLVGSAVVVLLENKIGEFGNLLASLTGVDWFRTLGESVTIVTG CCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH LIFVVCVLAFRRGIMGEILARIRKTP HHHHHHHHHHHHCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]