Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yggB [C]
Identifier: 120609890
GI number: 120609890
Start: 1324177
End: 1324914
Strand: Reverse
Name: yggB [C]
Synonym: Aave_1202
Alternate gene names: 120609890
Gene position: 1324914-1324177 (Counterclockwise)
Preceding gene: 120609891
Following gene: 120609867
Centisome position: 24.75
GC content: 66.4
Gene sequence:
>738_bases ATGCTCCCTCCGTGGGTGAGCCATCCTTCTGTTCTTTCCCAAACCATTTCCCGGACGTTGACCGCTTTGCCCCCCTTGTC CATGACCCGGCTCCGCACCTATTTTCCCGACTGGATGCAGGAATGGCTCGACATCATCGTGCCGGGCCTCCAGATCGTGC TCATCCTGGTGCTCGCCGTGCTGCTGCAACGGACGCTGCGCCGCCTGCTCGAACGCGCGGGACGCCACTACCACTGGCCC ATCGAGCTGATGGTGCCCATCAACGGGCTGGTGCGCTGGATCATCATGGGCAGCGCCGTACTGCTGGTGCTGGAGCGGCT GGGGGTTTCGGCCACCGTGCTGTGGACGGCGTTCACGGGCTTCGCGGCAGTGGGCGCGGTCGCCTTCTTCGCGGCGTGGA GCGTGCTCTCCAACCTGTTCTGCGCCCTGCTGATCTTCACCGCCGGTCCTTTCCGTCTGGGCGACTACATCGAGGTGCTG GACACCGCGGAAAAGCCTGGAGCCAAAGGCCGCGTCGTGGACATCAACCTGCTCTACACCACGCTCGAAGACTTCGACGG CACGCCGGATGCGCCCGTGCTGCTGCAGATCCCCAATGCACTGATCTTCCAGCGCGTGGTCCGGCGCTGGACCAGTGCGC CGCCCCGGCCGGCGGATGCGGCGAAGACACAGCCCCCCGCGCCCGCGCATTCCACGGATCCGGTAGCGCCGGACACCCCC TCGCTGCCAGCAGCCTGA
Upstream 100 bases:
>100_bases GGATACCATCGAGCAGTTGCGCGGCTGACCCCCTGCGCCGCCACGCGCGCTTCCCGCCCCGGCAGCTGCGGGAACGGCCT GCGGCCCCCCGCCGGCAGGG
Downstream 100 bases:
>100_bases CAGAGAACCCGGACCGCCCTCCGCCACCTTCCATTCAGGATCTCAGCCGCCTTCGTGCGGCTTGTGTCCGCCCCCGTGGT GCGGCGCCTGCGGCTGCGGC
Product: small-conductance mechanosensitive channel-like protein
Products: NA
Alternate protein names: Small-Conductance Mechanosensitive Channel Protein; Transmembrane Protein; Small-Conductance Mechanosensitive Channel
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MLPPWVSHPSVLSQTISRTLTALPPLSMTRLRTYFPDWMQEWLDIIVPGLQIVLILVLAVLLQRTLRRLLERAGRHYHWP IELMVPINGLVRWIIMGSAVLLVLERLGVSATVLWTAFTGFAAVGAVAFFAAWSVLSNLFCALLIFTAGPFRLGDYIEVL DTAEKPGAKGRVVDINLLYTTLEDFDGTPDAPVLLQIPNALIFQRVVRRWTSAPPRPADAAKTQPPAPAHSTDPVAPDTP SLPAA
Sequences:
>Translated_245_residues MLPPWVSHPSVLSQTISRTLTALPPLSMTRLRTYFPDWMQEWLDIIVPGLQIVLILVLAVLLQRTLRRLLERAGRHYHWP IELMVPINGLVRWIIMGSAVLLVLERLGVSATVLWTAFTGFAAVGAVAFFAAWSVLSNLFCALLIFTAGPFRLGDYIEVL DTAEKPGAKGRVVDINLLYTTLEDFDGTPDAPVLLQIPNALIFQRVVRRWTSAPPRPADAAKTQPPAPAHSTDPVAPDTP SLPAA >Mature_245_residues MLPPWVSHPSVLSQTISRTLTALPPLSMTRLRTYFPDWMQEWLDIIVPGLQIVLILVLAVLLQRTLRRLLERAGRHYHWP IELMVPINGLVRWIIMGSAVLLVLERLGVSATVLWTAFTGFAAVGAVAFFAAWSVLSNLFCALLIFTAGPFRLGDYIEVL DTAEKPGAKGRVVDINLLYTTLEDFDGTPDAPVLLQIPNALIFQRVVRRWTSAPPRPADAAKTQPPAPAHSTDPVAPDTP SLPAA
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26985; Mature: 26985
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPPWVSHPSVLSQTISRTLTALPPLSMTRLRTYFPDWMQEWLDIIVPGLQIVLILVLAV CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLQRTLRRLLERAGRHYHWPIELMVPINGLVRWIIMGSAVLLVLERLGVSATVLWTAFTG HHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH FAAVGAVAFFAAWSVLSNLFCALLIFTAGPFRLGDYIEVLDTAEKPGAKGRVVDINLLYT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHH TLEDFDGTPDAPVLLQIPNALIFQRVVRRWTSAPPRPADAAKTQPPAPAHSTDPVAPDTP HHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SLPAA CCCCC >Mature Secondary Structure MLPPWVSHPSVLSQTISRTLTALPPLSMTRLRTYFPDWMQEWLDIIVPGLQIVLILVLAV CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLQRTLRRLLERAGRHYHWPIELMVPINGLVRWIIMGSAVLLVLERLGVSATVLWTAFTG HHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH FAAVGAVAFFAAWSVLSNLFCALLIFTAGPFRLGDYIEVLDTAEKPGAKGRVVDINLLYT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHH TLEDFDGTPDAPVLLQIPNALIFQRVVRRWTSAPPRPADAAKTQPPAPAHSTDPVAPDTP HHHHCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SLPAA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA