Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is fabD [H]
Identifier: 120609872
GI number: 120609872
Start: 1304957
End: 1305913
Strand: Direct
Name: fabD [H]
Synonym: Aave_1184
Alternate gene names: 120609872
Gene position: 1304957-1305913 (Clockwise)
Preceding gene: 120609871
Following gene: 120609873
Centisome position: 24.38
GC content: 70.01
Gene sequence:
>957_bases ATGACCACGAAGAACTTCGCATTCGTTTTTCCCGGACAAGGATCGCAATCCGTCGGCATGCTCGACGCCTGGGGTGACCA TCCCGCCGTGGCCGAAGCCGTCCAGGAAGCCTCCGACGCGCTCGGCGAGGACATCGGCCGCCTGATCCATGAAGGCCCCA AGGAAGCCCTGGCGCTGACCACCAACACCCAGCCCGTGATGCTGGTCGCCGGCGTGGCGGCCTGGCGCGTCTGGCTCGCG GAAGGCGGCGCGCAACCCGCCGCGGTGGCCGGCCACTCCCTGGGTGAATATTCCGCCCTGGTGGCCTCCGGCGTGCTCAC GCTGTCGCAGGCGGCTCGGCTGGTTCGGCTGCGCGCCGCCGCCATGCAGGAAGCCGTGCCCGTGGGCATGGGTGCCATGG CCGCCATCCTCGGCCTCGAATCGGCCAAGGTGGTGGAAGGCTGCGCCCACGCCACCGCGGCGTTCGGCGCGGGCAGCGCG GATGTCGTCGAGGCCGTGAATTTCAACGACCCGGCCCAGACCGTCATCGCCGGTACCAAGGCGGGCGTCGAGGAAGCCTG CGAAATGCTCAAGGCCGCGGGCGCCAAGCGCGCGCTGCCCCTGCCCGTGTCCGCGCCTTTCCACTCCAGCCTCATGAAGC CGGCTGCCGAGAAGCTGCGCGAGGCACTGGCCGGCCTGTCCCTGACCTCCCCCCGCATTCCCGTGGTCAACAACATCGAC GTGGCCGTGGAGCGGGGGGCGGATGCGATCCGCGATGCGCTCTACCGCCAGGCCTTCGGCCCCGTGCGGTGGGTGGAGTG CATCGGTGCGCTCAAGGCGCGGGGTGCCACCCACGTCATCGAGTGCGGCCCTGGCAAGGTGCTCATGGGCATGACCAAGC GCATCGACGCGACCCTGGTGGGCGGCTCGGTGTACGATCCCGCATCCCTGCAGGAAACCCGCGAACTGCTGGCCTGA
Upstream 100 bases:
>100_bases GGGGGCTTCACCTGGGGCGCCGTGCTGCTCACGCTCTGAGTGCTGCCGCGGCCTGCGCCGAAGCACGGCCCCGGTGACTC GTATGACCTGAATTTCCCTC
Downstream 100 bases:
>100_bases GACGGCTGACCAGAGAGACACCATGACCCTTTCGAATTCCCCTGACAACGCCGCCCGCATCGCCCTGGTGACGGGTGCCT CCCGCGGCATCGGTGCCGCC
Product: malonyl CoA-acyl carrier protein transacylase
Products: NA
Alternate protein names: MCT [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALTTNTQPVMLVAGVAAWRVWLA EGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAAAMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSA DVVEAVNFNDPAQTVIAGTKAGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLVGGSVYDPASLQETRELLA
Sequences:
>Translated_318_residues MTTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALTTNTQPVMLVAGVAAWRVWLA EGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAAAMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSA DVVEAVNFNDPAQTVIAGTKAGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLVGGSVYDPASLQETRELLA >Mature_317_residues TTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALTTNTQPVMLVAGVAAWRVWLAE GGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAAAMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSAD VVEAVNFNDPAQTVIAGTKAGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNIDV AVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLVGGSVYDPASLQETRELLA
Specific function: Fatty acid biosynthesis. [C]
COG id: COG0331
COG function: function code I; (acyl-carrier-protein) S-malonyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fabD family [H]
Homologues:
Organism=Homo sapiens, GI51243059, Length=305, Percent_Identity=32.7868852459016, Blast_Score=136, Evalue=3e-32, Organism=Escherichia coli, GI1787334, Length=313, Percent_Identity=53.0351437699681, Blast_Score=298, Evalue=3e-82, Organism=Caenorhabditis elegans, GI71984332, Length=266, Percent_Identity=32.3308270676692, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17550940, Length=241, Percent_Identity=29.8755186721992, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24665753, Length=302, Percent_Identity=32.4503311258278, Blast_Score=131, Evalue=5e-31,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001227 - InterPro: IPR014043 - InterPro: IPR016035 - InterPro: IPR004410 - InterPro: IPR016036 [H]
Pfam domain/function: PF00698 Acyl_transf_1 [H]
EC number: =2.3.1.39 [H]
Molecular weight: Translated: 32678; Mature: 32547
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALT CCCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEE TNTQPVMLVAGVAAWRVWLAEGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAA CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSADVVEAVNFNDPAQTVIAGTK HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCC AGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLV HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCEEEE GGSVYDPASLQETRELLA CCCCCCCHHHHHHHHHHC >Mature Secondary Structure TTKNFAFVFPGQGSQSVGMLDAWGDHPAVAEAVQEASDALGEDIGRLIHEGPKEALALT CCCCEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEE TNTQPVMLVAGVAAWRVWLAEGGAQPAAVAGHSLGEYSALVASGVLTLSQAARLVRLRAA CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AMQEAVPVGMGAMAAILGLESAKVVEGCAHATAAFGAGSADVVEAVNFNDPAQTVIAGTK HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHCCC AGVEEACEMLKAAGAKRALPLPVSAPFHSSLMKPAAEKLREALAGLSLTSPRIPVVNNID CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH VAVERGADAIRDALYRQAFGPVRWVECIGALKARGATHVIECGPGKVLMGMTKRIDATLV HHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCEEEE GGSVYDPASLQETRELLA CCCCCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]