Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is argD1 [H]
Identifier: 120609852
GI number: 120609852
Start: 1283864
End: 1285060
Strand: Reverse
Name: argD1 [H]
Synonym: Aave_1164
Alternate gene names: 120609852
Gene position: 1285060-1283864 (Counterclockwise)
Preceding gene: 120609854
Following gene: 120609851
Centisome position: 24.01
GC content: 69.26
Gene sequence:
>1197_bases ATGAGCGCTTCCGCCCAGCCCGCCTCGCCCCACGTGATGAACACCTACGGCCGCCTGCCGATCGCGCTCGAGCGAGGCCA GGGCTGCAGGGTCTGGGACGTGGACGGCAAGCAGTACCTCGACGCGCTGGGCGGCATCGCCGTGAACACGCTGGGCCACA ACCACCCGAAGCTGGTGCCCGCGCTGCAGGAGCAGGTGGCCAAGCTGATCCACAGCTCCAATTACTACCACGTGCCCCTG CAGGAGCAGCTCGCCGCGCGGCTGGTGGAGCGTTCCGGCATGACCAACGTGTTCTTTTGCAATTCCGGGCTGGAGGCCAA CGAGGCCGCGCTCAAGCTGGCGCGCAAGTACGGCCACGACAAGGGCATCGGGCGCCCGCAGATCGTGGTCTATGAGAAGG CCTTCCACGGCCGCTCCATCGCCACCCTGTCGGCCACCGGCAACCCGAAGGTGCAGGCCGGCTTCGGCCCGCTGGTCGAA GGCTTCATCCGCGTGCCGATGAACGACATCGAGGCCATCCGCCAAGCCACGGAGGGCAACCCCGACGTGGTGGCCGTGTT CTTCGAGACCATCCAGGGCGAAGGCGGCGTGAACCCGATGCGCATCGAGTACCTGCAGCAGCTGCGGCAGCTCTGCGACG AGCGCGGCTGGCTGATGATGATCGACGAGGTGCAGTGCGGCATGGGCCGCACCGGCAGGTGGTTCGCGCACCAGTGGGCC GGCATCGTGCCGGACGTGATGCCGCTGGCCAAGGGCCTGGGCTCGGGCGTGCCGATCGGCGCCGTGGTGGCCGGCCCCAA GGCCGCGAACATCTTCGCGCCGGGCAACCACGGCACGACCTTCGGCGGCAACCCGCTGGCCATGCGTGCGGGCGTGGAAA CCATCCGCATCATGGAAGAAGAAGGCCTGCTGCAGAACGCGGCCGACGTGGGCGCCCACCTGAAGGCGGCCCTGCAGCGC GAGCTGGGCGGGTTGCCCGGGGTGAAGGACATCCGCGGCCAGGGCCTGATGCTGGGCATCGAGCTCGACCGGCCGTGCGG CGTGCTCGTGGGCCGTGCCGCGGAAGCCGGCCTGCTGCTGTCCGTCACCGCGGACAGCGTGATCCGCATGGTGCCCGCGC TCATCCTCACGCGCGAAGAGGCCGACGAGATCGTGTCCCTGCTCGTTCCGCTGGTCAAGGCCTTCCTGGCCGAATGA
Upstream 100 bases:
>100_bases ATGCCCTGCACCTAGAATCGTGCCTTCGCGCGCCGGGCGGCCTTCTCCCCGGACCGGCGCATTCTTTCCCGATTCGCATC GAACGCCTGGAGATCTCCGC
Downstream 100 bases:
>100_bases AAGCTCCCTCCGACATGAAGCACTATCTGCAATTCAAGGATTTTTCCGCTCAGGAATACGCCTATCTCTTCGAACGCGCG GCGGTCATCAAGGGCAAGTT
Product: acetylornithine aminotransferase
Products: NA
Alternate protein names: ACOAT 1 [H]
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MSASAQPASPHVMNTYGRLPIALERGQGCRVWDVDGKQYLDALGGIAVNTLGHNHPKLVPALQEQVAKLIHSSNYYHVPL QEQLAARLVERSGMTNVFFCNSGLEANEAALKLARKYGHDKGIGRPQIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVE GFIRVPMNDIEAIRQATEGNPDVVAVFFETIQGEGGVNPMRIEYLQQLRQLCDERGWLMMIDEVQCGMGRTGRWFAHQWA GIVPDVMPLAKGLGSGVPIGAVVAGPKAANIFAPGNHGTTFGGNPLAMRAGVETIRIMEEEGLLQNAADVGAHLKAALQR ELGGLPGVKDIRGQGLMLGIELDRPCGVLVGRAAEAGLLLSVTADSVIRMVPALILTREEADEIVSLLVPLVKAFLAE
Sequences:
>Translated_398_residues MSASAQPASPHVMNTYGRLPIALERGQGCRVWDVDGKQYLDALGGIAVNTLGHNHPKLVPALQEQVAKLIHSSNYYHVPL QEQLAARLVERSGMTNVFFCNSGLEANEAALKLARKYGHDKGIGRPQIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVE GFIRVPMNDIEAIRQATEGNPDVVAVFFETIQGEGGVNPMRIEYLQQLRQLCDERGWLMMIDEVQCGMGRTGRWFAHQWA GIVPDVMPLAKGLGSGVPIGAVVAGPKAANIFAPGNHGTTFGGNPLAMRAGVETIRIMEEEGLLQNAADVGAHLKAALQR ELGGLPGVKDIRGQGLMLGIELDRPCGVLVGRAAEAGLLLSVTADSVIRMVPALILTREEADEIVSLLVPLVKAFLAE >Mature_397_residues SASAQPASPHVMNTYGRLPIALERGQGCRVWDVDGKQYLDALGGIAVNTLGHNHPKLVPALQEQVAKLIHSSNYYHVPLQ EQLAARLVERSGMTNVFFCNSGLEANEAALKLARKYGHDKGIGRPQIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVEG FIRVPMNDIEAIRQATEGNPDVVAVFFETIQGEGGVNPMRIEYLQQLRQLCDERGWLMMIDEVQCGMGRTGRWFAHQWAG IVPDVMPLAKGLGSGVPIGAVVAGPKAANIFAPGNHGTTFGGNPLAMRAGVETIRIMEEEGLLQNAADVGAHLKAALQRE LGGLPGVKDIRGQGLMLGIELDRPCGVLVGRAAEAGLLLSVTADSVIRMVPALILTREEADEIVSLLVPLVKAFLAE
Specific function: Involved In Both The Arginine And Lysine Biosynthetic Pathways. [C]
COG id: COG4992
COG function: function code E; Ornithine/acetylornithine aminotransferase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=392, Percent_Identity=35.7142857142857, Blast_Score=239, Evalue=3e-63, Organism=Homo sapiens, GI284507298, Length=305, Percent_Identity=36.0655737704918, Blast_Score=181, Evalue=1e-45, Organism=Homo sapiens, GI13994255, Length=440, Percent_Identity=30.9090909090909, Blast_Score=169, Evalue=6e-42, Organism=Homo sapiens, GI37574042, Length=411, Percent_Identity=28.9537712895377, Blast_Score=145, Evalue=9e-35, Organism=Homo sapiens, GI24119277, Length=408, Percent_Identity=29.4117647058824, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI226442705, Length=411, Percent_Identity=28.2238442822384, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI226442709, Length=380, Percent_Identity=28.4210526315789, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI188536080, Length=427, Percent_Identity=24.1217798594848, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI38679950, Length=427, Percent_Identity=24.1217798594848, Blast_Score=96, Evalue=6e-20, Organism=Homo sapiens, GI38679946, Length=427, Percent_Identity=24.1217798594848, Blast_Score=96, Evalue=6e-20, Organism=Escherichia coli, GI1789759, Length=367, Percent_Identity=41.41689373297, Blast_Score=263, Evalue=1e-71, Organism=Escherichia coli, GI1788044, Length=370, Percent_Identity=39.4594594594595, Blast_Score=261, Evalue=8e-71, Organism=Escherichia coli, GI145693181, Length=368, Percent_Identity=38.8586956521739, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1789016, Length=371, Percent_Identity=35.8490566037736, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI1787560, Length=396, Percent_Identity=32.8282828282828, Blast_Score=189, Evalue=3e-49, Organism=Escherichia coli, GI1786349, Length=341, Percent_Identity=30.791788856305, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI1786991, Length=380, Percent_Identity=28.1578947368421, Blast_Score=122, Evalue=3e-29, Organism=Caenorhabditis elegans, GI25144271, Length=390, Percent_Identity=35.6410256410256, Blast_Score=241, Evalue=4e-64, Organism=Caenorhabditis elegans, GI32564660, Length=446, Percent_Identity=30.0448430493274, Blast_Score=182, Evalue=2e-46, Organism=Caenorhabditis elegans, GI25144274, Length=273, Percent_Identity=35.1648351648352, Blast_Score=165, Evalue=4e-41, Organism=Caenorhabditis elegans, GI71992977, Length=362, Percent_Identity=30.6629834254144, Blast_Score=144, Evalue=1e-34, Organism=Caenorhabditis elegans, GI71981843, Length=171, Percent_Identity=38.5964912280702, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17541228, Length=440, Percent_Identity=26.3636363636364, Blast_Score=100, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6324432, Length=399, Percent_Identity=37.0927318295739, Blast_Score=260, Evalue=2e-70, Organism=Saccharomyces cerevisiae, GI6323470, Length=392, Percent_Identity=34.1836734693878, Blast_Score=210, Evalue=3e-55, Organism=Saccharomyces cerevisiae, GI6324386, Length=351, Percent_Identity=25.0712250712251, Blast_Score=87, Evalue=3e-18, Organism=Drosophila melanogaster, GI21357415, Length=383, Percent_Identity=33.9425587467363, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI28574759, Length=454, Percent_Identity=29.295154185022, Blast_Score=179, Evalue=3e-45, Organism=Drosophila melanogaster, GI161085790, Length=454, Percent_Identity=29.0748898678414, Blast_Score=177, Evalue=9e-45, Organism=Drosophila melanogaster, GI21356575, Length=413, Percent_Identity=29.7820823244552, Blast_Score=151, Evalue=8e-37, Organism=Drosophila melanogaster, GI281366494, Length=417, Percent_Identity=25.4196642685851, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24667139, Length=417, Percent_Identity=25.4196642685851, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24667143, Length=417, Percent_Identity=25.4196642685851, Blast_Score=96, Evalue=3e-20,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004636 - InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.11 [H]
Molecular weight: Translated: 42594; Mature: 42463
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASAQPASPHVMNTYGRLPIALERGQGCRVWDVDGKQYLDALGGIAVNTLGHNHPKLVP CCCCCCCCCCCHHHHCCCCEEEEECCCCCEEEECCHHHHHHHHCCEEEECCCCCCCCHHH ALQEQVAKLIHSSNYYHVPLQEQLAARLVERSGMTNVFFCNSGLEANEAALKLARKYGHD HHHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC KGIGRPQIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVEGFIRVPMNDIEAIRQATEGN CCCCCCEEEEEEECCCCCEEEEEECCCCCCEECCCCHHHHHHHHCCHHHHHHHHHHCCCC PDVVAVFFETIQGEGGVNPMRIEYLQQLRQLCDERGWLMMIDEVQCGMGRTGRWFAHQWA CCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH GIVPDVMPLAKGLGSGVPIGAVVAGPKAANIFAPGNHGTTFGGNPLAMRAGVETIRIMEE CCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEECCCCHHEEEEHH EGLLQNAADVGAHLKAALQRELGGLPGVKDIRGQGLMLGIELDRPCGVLVGRAAEAGLLL CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEECCCCCCEEECCCCCCEEE SVTADSVIRMVPALILTREEADEIVSLLVPLVKAFLAE EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SASAQPASPHVMNTYGRLPIALERGQGCRVWDVDGKQYLDALGGIAVNTLGHNHPKLVP CCCCCCCCCCHHHHCCCCEEEEECCCCCEEEECCHHHHHHHHCCEEEECCCCCCCCHHH ALQEQVAKLIHSSNYYHVPLQEQLAARLVERSGMTNVFFCNSGLEANEAALKLARKYGHD HHHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCC KGIGRPQIVVYEKAFHGRSIATLSATGNPKVQAGFGPLVEGFIRVPMNDIEAIRQATEGN CCCCCCEEEEEEECCCCCEEEEEECCCCCCEECCCCHHHHHHHHCCHHHHHHHHHHCCCC PDVVAVFFETIQGEGGVNPMRIEYLQQLRQLCDERGWLMMIDEVQCGMGRTGRWFAHQWA CCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH GIVPDVMPLAKGLGSGVPIGAVVAGPKAANIFAPGNHGTTFGGNPLAMRAGVETIRIMEE CCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCEEECCCCHHEEEEHH EGLLQNAADVGAHLKAALQRELGGLPGVKDIRGQGLMLGIELDRPCGVLVGRAAEAGLLL CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEECCCCCCEEECCCCCCEEE SVTADSVIRMVPALILTREEADEIVSLLVPLVKAFLAE EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]