Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is argF

Identifier: 120609851

GI number: 120609851

Start: 1282938

End: 1283867

Strand: Reverse

Name: argF

Synonym: Aave_1163

Alternate gene names: 120609851

Gene position: 1283867-1282938 (Counterclockwise)

Preceding gene: 120609852

Following gene: 120609850

Centisome position: 23.99

GC content: 65.59

Gene sequence:

>930_bases
ATGAAAGCTCCCTCCGACATGAAGCACTATCTGCAATTCAAGGATTTTTCCGCTCAGGAATACGCCTATCTCTTCGAACG
CGCGGCGGTCATCAAGGGCAAGTTCAAGCGCTACGAGAAGCACCATCCGCTCACGGACCGCACGCTGGCCATGATCTTCG
AGAAGGCCAGCACGCGCACGCGCGTGAGCTTCGAGGCCGGCATGTACCAGCTCGGCGGCAGCGTGGTGCACCTCACCACG
GGCGACAGCCAGCTCGGCCGCGCCGAGCCCATCGAGGACAGCGCCAAGGTCATCAGCCGCATGGTGGATCTGGTCATGAT
CCGCACCTACGAGCAGACCAAGATCGAGCGCTTCGCGGCGCATTCGCGGGTGCCGGTCATCAATGGCCTCACCAACGAGT
TCCATCCCTGCCAGATCCTGGCGGACATCTTCACGTTCATCGAGCACCGGGGGTCCATCCAGGGCAGGACGGTCGCCTGG
GTGGGCGACGGCAACAACATGGCCAACACCTGGCTGCAGGCGGCCGAGCTGCTGGGCTTCACCGTGCATGTGAGCACCCC
CTCCGGCTACGAAGTGGACAGCCGCGTCGCGGGCGTGGCGGCCGGGTCGCATTACAAGGTGTTCAGCGACCCGCTGGAAG
CCTGCCGCGGCGCCGACCTCATCACCACCGACGTGTGGACCAGCATGGGCTACGAGGCCGAGAACGAGGCCCGCAAGAAG
GCGTTCGCCGACTGGTGCGTGGACGCCGAGATGATGGCCGCCGCGCGGCCGGAGGCGCTCTTCATGCACTGCCTGCCGGC
GCACCGCGGCGAGGAAGTGGAGGCGGACGTCATCGACGGCCCGCAGTCCGTCGTGTGGGACGAGGCGGAAAACCGCATGC
ACGTGCAGAAGGCGCTGATGGAGTACCTGCTGCTCGGCCAGGTCGCGTGA

Upstream 100 bases:

>100_bases
ACAGCGTGATCCGCATGGTGCCCGCGCTCATCCTCACGCGCGAAGAGGCCGACGAGATCGTGTCCCTGCTCGTTCCGCTG
GTCAAGGCCTTCCTGGCCGA

Downstream 100 bases:

>100_bases
GGCGCCTGCCTCAAGCCTAGCGGCGCTCCACCTTTCTTCACTGCCATGGCCGCTCCCGATCGCCGCGCGCTCCTGAGCCG
CTGGGATGCGCTCGGGGCGG

Product: ornithine carbamoyltransferase

Products: NA

Alternate protein names: OTCase

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRTRVSFEAGMYQLGGSVVHLTT
GDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAAHSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAW
VGDGNNMANTWLQAAELLGFTVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK
AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALMEYLLLGQVA

Sequences:

>Translated_309_residues
MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRTRVSFEAGMYQLGGSVVHLTT
GDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAAHSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAW
VGDGNNMANTWLQAAELLGFTVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK
AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALMEYLLLGQVA
>Mature_309_residues
MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRTRVSFEAGMYQLGGSVVHLTT
GDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAAHSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAW
VGDGNNMANTWLQAAELLGFTVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK
AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALMEYLLLGQVA

Specific function: Arginine biosynthesis; sixth step. [C]

COG id: COG0078

COG function: function code E; Ornithine carbamoyltransferase

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATCase/OTCase family

Homologues:

Organism=Homo sapiens, GI38788445, Length=304, Percent_Identity=39.4736842105263, Blast_Score=229, Evalue=2e-60,
Organism=Homo sapiens, GI18105007, Length=304, Percent_Identity=29.2763157894737, Blast_Score=114, Evalue=1e-25,
Organism=Escherichia coli, GI1790703, Length=322, Percent_Identity=38.1987577639752, Blast_Score=207, Evalue=7e-55,
Organism=Escherichia coli, GI1786469, Length=322, Percent_Identity=38.5093167701863, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI2367364, Length=314, Percent_Identity=27.3885350318471, Blast_Score=88, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI193204318, Length=327, Percent_Identity=28.7461773700306, Blast_Score=91, Evalue=9e-19,
Organism=Saccharomyces cerevisiae, GI6322373, Length=312, Percent_Identity=36.5384615384615, Blast_Score=205, Evalue=9e-54,
Organism=Saccharomyces cerevisiae, GI6322331, Length=283, Percent_Identity=26.5017667844523, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24642586, Length=312, Percent_Identity=29.1666666666667, Blast_Score=106, Evalue=2e-23,

Paralogues:

None

Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2066 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): OTC_ACIAC (A1TLB7)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_969529.1
- ProteinModelPortal:   A1TLB7
- SMR:   A1TLB7
- STRING:   A1TLB7
- GeneID:   4669557
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_1163
- NMPDR:   fig|397945.5.peg.1014
- eggNOG:   COG0078
- HOGENOM:   HBG579429
- OMA:   AKFLHCL
- PhylomeDB:   A1TLB7
- ProtClustDB:   PRK00779
- BioCyc:   AAVE397945:AAVE_1163-MONOMER
- HAMAP:   MF_01109
- InterPro:   IPR006132
- InterPro:   IPR006130
- InterPro:   IPR006131
- InterPro:   IPR002292
- PRINTS:   PR00100
- PRINTS:   PR00102
- TIGRFAMs:   TIGR00658

Pfam domain/function: PF00185 OTCace; PF02729 OTCace_N; SSF53671 Asp/Orn_carbamoyltranf

EC number: =2.1.3.3

Molecular weight: Translated: 34600; Mature: 34600

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00097 CARBAMOYLTRANSFERASE

Important sites: BINDING 108-108 BINDING 135-135

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRT
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCE
RVSFEAGMYQLGGSVVHLTTGDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAA
EEEHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAWVGDGNNMANTWLQAAELLGF
HCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHEE
TVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK
EEEEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHH
AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALM
HHHHHHCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
EYLLLGQVA
HHHHHHCCC
>Mature Secondary Structure
MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRT
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCE
RVSFEAGMYQLGGSVVHLTTGDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAA
EEEHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAWVGDGNNMANTWLQAAELLGF
HCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHEE
TVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK
EEEEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHH
AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALM
HHHHHHCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH
EYLLLGQVA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA