Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is argF
Identifier: 120609851
GI number: 120609851
Start: 1282938
End: 1283867
Strand: Reverse
Name: argF
Synonym: Aave_1163
Alternate gene names: 120609851
Gene position: 1283867-1282938 (Counterclockwise)
Preceding gene: 120609852
Following gene: 120609850
Centisome position: 23.99
GC content: 65.59
Gene sequence:
>930_bases ATGAAAGCTCCCTCCGACATGAAGCACTATCTGCAATTCAAGGATTTTTCCGCTCAGGAATACGCCTATCTCTTCGAACG CGCGGCGGTCATCAAGGGCAAGTTCAAGCGCTACGAGAAGCACCATCCGCTCACGGACCGCACGCTGGCCATGATCTTCG AGAAGGCCAGCACGCGCACGCGCGTGAGCTTCGAGGCCGGCATGTACCAGCTCGGCGGCAGCGTGGTGCACCTCACCACG GGCGACAGCCAGCTCGGCCGCGCCGAGCCCATCGAGGACAGCGCCAAGGTCATCAGCCGCATGGTGGATCTGGTCATGAT CCGCACCTACGAGCAGACCAAGATCGAGCGCTTCGCGGCGCATTCGCGGGTGCCGGTCATCAATGGCCTCACCAACGAGT TCCATCCCTGCCAGATCCTGGCGGACATCTTCACGTTCATCGAGCACCGGGGGTCCATCCAGGGCAGGACGGTCGCCTGG GTGGGCGACGGCAACAACATGGCCAACACCTGGCTGCAGGCGGCCGAGCTGCTGGGCTTCACCGTGCATGTGAGCACCCC CTCCGGCTACGAAGTGGACAGCCGCGTCGCGGGCGTGGCGGCCGGGTCGCATTACAAGGTGTTCAGCGACCCGCTGGAAG CCTGCCGCGGCGCCGACCTCATCACCACCGACGTGTGGACCAGCATGGGCTACGAGGCCGAGAACGAGGCCCGCAAGAAG GCGTTCGCCGACTGGTGCGTGGACGCCGAGATGATGGCCGCCGCGCGGCCGGAGGCGCTCTTCATGCACTGCCTGCCGGC GCACCGCGGCGAGGAAGTGGAGGCGGACGTCATCGACGGCCCGCAGTCCGTCGTGTGGGACGAGGCGGAAAACCGCATGC ACGTGCAGAAGGCGCTGATGGAGTACCTGCTGCTCGGCCAGGTCGCGTGA
Upstream 100 bases:
>100_bases ACAGCGTGATCCGCATGGTGCCCGCGCTCATCCTCACGCGCGAAGAGGCCGACGAGATCGTGTCCCTGCTCGTTCCGCTG GTCAAGGCCTTCCTGGCCGA
Downstream 100 bases:
>100_bases GGCGCCTGCCTCAAGCCTAGCGGCGCTCCACCTTTCTTCACTGCCATGGCCGCTCCCGATCGCCGCGCGCTCCTGAGCCG CTGGGATGCGCTCGGGGCGG
Product: ornithine carbamoyltransferase
Products: NA
Alternate protein names: OTCase
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRTRVSFEAGMYQLGGSVVHLTT GDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAAHSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAW VGDGNNMANTWLQAAELLGFTVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALMEYLLLGQVA
Sequences:
>Translated_309_residues MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRTRVSFEAGMYQLGGSVVHLTT GDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAAHSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAW VGDGNNMANTWLQAAELLGFTVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALMEYLLLGQVA >Mature_309_residues MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRTRVSFEAGMYQLGGSVVHLTT GDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAAHSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAW VGDGNNMANTWLQAAELLGFTVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALMEYLLLGQVA
Specific function: Arginine biosynthesis; sixth step. [C]
COG id: COG0078
COG function: function code E; Ornithine carbamoyltransferase
Gene ontology:
Cell location: Cytoplasm (Probable)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATCase/OTCase family
Homologues:
Organism=Homo sapiens, GI38788445, Length=304, Percent_Identity=39.4736842105263, Blast_Score=229, Evalue=2e-60, Organism=Homo sapiens, GI18105007, Length=304, Percent_Identity=29.2763157894737, Blast_Score=114, Evalue=1e-25, Organism=Escherichia coli, GI1790703, Length=322, Percent_Identity=38.1987577639752, Blast_Score=207, Evalue=7e-55, Organism=Escherichia coli, GI1786469, Length=322, Percent_Identity=38.5093167701863, Blast_Score=203, Evalue=1e-53, Organism=Escherichia coli, GI2367364, Length=314, Percent_Identity=27.3885350318471, Blast_Score=88, Evalue=8e-19, Organism=Caenorhabditis elegans, GI193204318, Length=327, Percent_Identity=28.7461773700306, Blast_Score=91, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6322373, Length=312, Percent_Identity=36.5384615384615, Blast_Score=205, Evalue=9e-54, Organism=Saccharomyces cerevisiae, GI6322331, Length=283, Percent_Identity=26.5017667844523, Blast_Score=88, Evalue=1e-18, Organism=Drosophila melanogaster, GI24642586, Length=312, Percent_Identity=29.1666666666667, Blast_Score=106, Evalue=2e-23,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2066 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): OTC_ACIAC (A1TLB7)
Other databases:
- EMBL: CP000512 - RefSeq: YP_969529.1 - ProteinModelPortal: A1TLB7 - SMR: A1TLB7 - STRING: A1TLB7 - GeneID: 4669557 - GenomeReviews: CP000512_GR - KEGG: aav:Aave_1163 - NMPDR: fig|397945.5.peg.1014 - eggNOG: COG0078 - HOGENOM: HBG579429 - OMA: AKFLHCL - PhylomeDB: A1TLB7 - ProtClustDB: PRK00779 - BioCyc: AAVE397945:AAVE_1163-MONOMER - HAMAP: MF_01109 - InterPro: IPR006132 - InterPro: IPR006130 - InterPro: IPR006131 - InterPro: IPR002292 - PRINTS: PR00100 - PRINTS: PR00102 - TIGRFAMs: TIGR00658
Pfam domain/function: PF00185 OTCace; PF02729 OTCace_N; SSF53671 Asp/Orn_carbamoyltranf
EC number: =2.1.3.3
Molecular weight: Translated: 34600; Mature: 34600
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: PS00097 CARBAMOYLTRANSFERASE
Important sites: BINDING 108-108 BINDING 135-135
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRT CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCE RVSFEAGMYQLGGSVVHLTTGDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAA EEEHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAWVGDGNNMANTWLQAAELLGF HCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHEE TVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK EEEEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHH AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALM HHHHHHCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH EYLLLGQVA HHHHHHCCC >Mature Secondary Structure MKAPSDMKHYLQFKDFSAQEYAYLFERAAVIKGKFKRYEKHHPLTDRTLAMIFEKASTRT CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCE RVSFEAGMYQLGGSVVHLTTGDSQLGRAEPIEDSAKVISRMVDLVMIRTYEQTKIERFAA EEEHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HSRVPVINGLTNEFHPCQILADIFTFIEHRGSIQGRTVAWVGDGNNMANTWLQAAELLGF HCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHEE TVHVSTPSGYEVDSRVAGVAAGSHYKVFSDPLEACRGADLITTDVWTSMGYEAENEARKK EEEEECCCCCCHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCCHHHHHHH AFADWCVDAEMMAAARPEALFMHCLPAHRGEEVEADVIDGPQSVVWDEAENRMHVQKALM HHHHHHCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHH EYLLLGQVA HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA