Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yufQ [H]
Identifier: 120609824
GI number: 120609824
Start: 1245864
End: 1246784
Strand: Direct
Name: yufQ [H]
Synonym: Aave_1134
Alternate gene names: 120609824
Gene position: 1245864-1246784 (Clockwise)
Preceding gene: 120609823
Following gene: 120609825
Centisome position: 23.28
GC content: 72.2
Gene sequence:
>921_bases ATGGAAGCCTACGCACTGCTCCTGGGCTCCACGCTCAGCGCCGGCACCGTACTGGCGCTCGCCGCGCTCGGGCTGCTCAT CAACGAGAAGGCGGGCATCGTCAACCTCGGCGCCGAGGGCATCATGCTCTGCGCGGCCATCGCGGGCTTCGCCACCGCCG TGCACACCGGCAGCACCTGGGCGGGCTTCGCGGCCGGCATGGGCGCCGGGGCGCTGCTCGCGGCCGTGTTCGGCGTGCTG GTGATCTGGCTGGGCACCAACCAGTACGCCACGGGCCTGGCCCTCAGCCTGTTCGGCGCGGGTTTCTCGGCCTTCGCGGG CATCCAGTACGTGCAGGCCAAGCTGCCCACGCTGCCGCGGTACGCGCTGCCGGTGCTGGGCGACCTGCCGCTGGTGGGCC CGGCGCTGTTCCGCCAGCATCCGCTGGTGTACGGCGCGATGGCGCTCACCGCGGGCCTCGCCTGGTTCCTCTACCGCTCG CGCGCGGGCCTGGTGCTGCGCTCGGTGGGCGAATCGCCCGAATCCGCGCATGCGCTCGGCTACCCGGTGCGGCGCATCCG CCTCGCGGCGGTGGTGGCGGGCGGCGCGCTGTGCGGGCTCGCGGGCGCCTACATCTCCACCGTCTATACGCCGCTCTGGG TCGAAGGCATGGTGGCCGGCCGCGGCTGGATCGCGCTGGCACTTACCACCTTCGCCACCTGGCGCCCGGCACGGGTGTTG CTTGGCGCCTACCTGTTCGGCGGCGTGACGATGCTGCAGTTCCACCTGCAGGCCACGGGCGTGCAGGTGGCCAGCCAACT CCTGAGCATGCTGCCCTACGTGGCCACCATCGTGGTGCTGGCGCTGATCTCGCGCAATCCGGCCTGGATCCGCGCGAACA TGCCGGCCTCGCTGGGCAAGCCGTTCCATCCCGGGGGCTGA
Upstream 100 bases:
>100_bases TGTTCCAGGGCCTGCTGCTGTTCACGCTGCTGGCCTGCGACACGCTGATCGCCTACCGCGTGCGCTGGATCGGCGCGCCG GCCCGGAAAGGAGCCGCGTG
Downstream 100 bases:
>100_bases CCGGGGCGCCGCGCCGTGCCATCATTGCCGTTTCCAAACGTTTCCGATTTCTTCTCTCACCTGTTTCCCCTGGAAGGACA TTCGACATGACCGATCTGCA
Product: inner-membrane translocator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 306
Protein sequence:
>306_residues MEAYALLLGSTLSAGTVLALAALGLLINEKAGIVNLGAEGIMLCAAIAGFATAVHTGSTWAGFAAGMGAGALLAAVFGVL VIWLGTNQYATGLALSLFGAGFSAFAGIQYVQAKLPTLPRYALPVLGDLPLVGPALFRQHPLVYGAMALTAGLAWFLYRS RAGLVLRSVGESPESAHALGYPVRRIRLAAVVAGGALCGLAGAYISTVYTPLWVEGMVAGRGWIALALTTFATWRPARVL LGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYVATIVVLALISRNPAWIRANMPASLGKPFHPGG
Sequences:
>Translated_306_residues MEAYALLLGSTLSAGTVLALAALGLLINEKAGIVNLGAEGIMLCAAIAGFATAVHTGSTWAGFAAGMGAGALLAAVFGVL VIWLGTNQYATGLALSLFGAGFSAFAGIQYVQAKLPTLPRYALPVLGDLPLVGPALFRQHPLVYGAMALTAGLAWFLYRS RAGLVLRSVGESPESAHALGYPVRRIRLAAVVAGGALCGLAGAYISTVYTPLWVEGMVAGRGWIALALTTFATWRPARVL LGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYVATIVVLALISRNPAWIRANMPASLGKPFHPGG >Mature_306_residues MEAYALLLGSTLSAGTVLALAALGLLINEKAGIVNLGAEGIMLCAAIAGFATAVHTGSTWAGFAAGMGAGALLAAVFGVL VIWLGTNQYATGLALSLFGAGFSAFAGIQYVQAKLPTLPRYALPVLGDLPLVGPALFRQHPLVYGAMALTAGLAWFLYRS RAGLVLRSVGESPESAHALGYPVRRIRLAAVVAGGALCGLAGAYISTVYTPLWVEGMVAGRGWIALALTTFATWRPARVL LGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYVATIVVLALISRNPAWIRANMPASLGKPFHPGG
Specific function: Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG1079
COG function: function code R; Uncharacterized ABC-type transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 31564; Mature: 31564
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEAYALLLGSTLSAGTVLALAALGLLINEKAGIVNLGAEGIMLCAAIAGFATAVHTGSTW CCHHHEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCH AGFAAGMGAGALLAAVFGVLVIWLGTNQYATGLALSLFGAGFSAFAGIQYVQAKLPTLPR HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC YALPVLGDLPLVGPALFRQHPLVYGAMALTAGLAWFLYRSRAGLVLRSVGESPESAHALG HHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHC YPVRRIRLAAVVAGGALCGLAGAYISTVYTPLWVEGMVAGRGWIALALTTFATWRPARVL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH LGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYVATIVVLALISRNPAWIRANMPASLGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCC PFHPGG CCCCCC >Mature Secondary Structure MEAYALLLGSTLSAGTVLALAALGLLINEKAGIVNLGAEGIMLCAAIAGFATAVHTGSTW CCHHHEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCH AGFAAGMGAGALLAAVFGVLVIWLGTNQYATGLALSLFGAGFSAFAGIQYVQAKLPTLPR HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC YALPVLGDLPLVGPALFRQHPLVYGAMALTAGLAWFLYRSRAGLVLRSVGESPESAHALG HHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHC YPVRRIRLAAVVAGGALCGLAGAYISTVYTPLWVEGMVAGRGWIALALTTFATWRPARVL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH LGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYVATIVVLALISRNPAWIRANMPASLGK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHCCC PFHPGG CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]