Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is cefD [H]
Identifier: 120609815
GI number: 120609815
Start: 1231831
End: 1233297
Strand: Direct
Name: cefD [H]
Synonym: Aave_1124
Alternate gene names: 120609815
Gene position: 1231831-1233297 (Clockwise)
Preceding gene: 120609814
Following gene: 120609817
Centisome position: 23.01
GC content: 66.8
Gene sequence:
>1467_bases ATGACCGAAACATCCCCTGTGGCGGCCGGTGCCGCCTGCCGCATCGAACCTGCCGCCGCGACCGAACCGCGCTGGAGCGC CAAGCGCCGCGACTTTCTGCGCATGATGGGTTATGGCGCCGGCGCGGCCACGCTCGGCCCGCTGGTGGCCGCGTGCGGCA GCAGCGGCGCCCAGACCACCGCCGAGGCCCTGCGCGAGCAGCTCGTGCGCGACGAGGCTTTCTGGACCGGCGTGCAGGAC ATGTTCGTCCTCAAGCCCGAGAAAACCTACATGAACATCGGTACCGGCGGCTCCATGCCCAAACTGGTGCTCGACGTCTT CGATACCGAGAACCGCAAGAAGGCCGCCGATTCGGGCAGCGGCTACGGCAACCTGCTCGACCTGCGCAAGCAGGTGGCCC CGGGCTTCGGCGTGGATGCGGACGAGCTCGCCTTCTCCGCCAACACGTCCTCTGGCATGTGCCATGCCATCCTCGGCATC GACTGGCAGCGCGGCGACGTGGTCGTGACCACCAACCACGAGCACGGCGGCGGCGACACGCCCCTGAAGATCGCCACCGA CCGCTACGGCATCGAGGTTTCGCGCATCGAGATGCCCGTGGGCAACAACCAGACCGCGGCCACCTACGTGAACCTGTTCG ACGAGCGCATCCGCGCGCTCAAGGCGCAGGGCAAACGCGTGCGGGCGATGATGTGGTCCTCGCCCACCTACAAGACCGGG ACCATGCTGCCGATCGCGGACCTGATGGGCGTGGTGAAGGCGCACGGGCTCATCAGCATCGTGGACGGCGCGCACCTGCC GGGCATGATGGCCTACAACTATGCCGAGCTGGGCATGGACTTCATGTCCGGCGCCGGGCACAAGTGGCAGTGCGGCCCGG GCTCCACCGGCATCCTGATCGTGCGCAACAAGATGCGGGCCTCCAACCCGCTGCCCCTGCCCAAGTGGTTTCCGATCCAC ACGAGTTCCTACCCCGCGAAGGACCGCACCACCAACGGCACCGAAACCTACGACATCGCCGCCACCATCACCAGCTGCGG CAGCCTGCACACGCCGATGTTCATGGCGCTCGCCCAGGCCTGCGCGCAATGGGACGGCATCGGGCGCAAGAAGATCGAGA CCTACGACCTCACGCTCTCGTCCTACCTCAAGGAAAAGATCGCCGAGCGCTGGGGCATCGACGCGCTGTACTCGCCCAAG GACGACCCGAAGCTGCTGTCCGCGCTCACGTCCTTCAACCCGTTCCCCAACAAGGCGGACGTGATGAACGCGCAGAAGGC GAGTGCCTTCGTCTCGCGCATGCAGAGCGACTACGCCCAGGGGTTCGTGATCCGCAGCGCGGACTTCCCCGTCATCGGGG CGCCGTCCAACCACTACGGCATCCGCGTCTCCACGCACCTCTGGCACGACGCGCGCGACATCGACCTGCTGGTCGATGCC ATGTGGGATCTGTCGCGCAAGATCTGA
Upstream 100 bases:
>100_bases GCCACCGTCGAGGTCGCGCGCCTGCCGCGCGACGTGAAGATCGAGATCGCGGCCATCGTCGGGCGCCGCTGAGCCACCGG ACCGATTCCAGGAGATTCCC
Downstream 100 bases:
>100_bases CCGTCCCCGCGGCGACGCCCCATGCAATGAAAAAAAGAGCGCGGGAATCGCTTCCCGCGCTCTTTGTCCTGCAGGAGGCT CGCGTCAGAAGCGGTGGCGG
Product: class V aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MTETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTTAEALREQLVRDEAFWTGVQD MFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGSGYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGI DWQRGDVVVTTNHEHGGGDTPLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILIVRNKMRASNPLPLPKWFPIH TSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQACAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPK DDPKLLSALTSFNPFPNKADVMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA MWDLSRKI
Sequences:
>Translated_488_residues MTETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTTAEALREQLVRDEAFWTGVQD MFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGSGYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGI DWQRGDVVVTTNHEHGGGDTPLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILIVRNKMRASNPLPLPKWFPIH TSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQACAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPK DDPKLLSALTSFNPFPNKADVMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA MWDLSRKI >Mature_487_residues TETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTTAEALREQLVRDEAFWTGVQDM FVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGSGYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGID WQRGDVVVTTNHEHGGGDTPLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTGT MLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILIVRNKMRASNPLPLPKWFPIHT SSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQACAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPKD DPKLLSALTSFNPFPNKADVMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDAM WDLSRKI
Specific function: Catalyzes the reversible isomerization between isopenicillin N and penicillin N [H]
COG id: COG0520
COG function: function code E; Selenocysteine lyase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: =5.1.1.17 [H]
Molecular weight: Translated: 53035; Mature: 52904
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTT CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH AEALREQLVRDEAFWTGVQDMFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGS HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCHHHCCCCC GYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGIDWQRGDVVVTTNHEHGGGDT CCHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCEEEEEECEECCCCEEEEECCCCCCCCC PLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG CEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILI CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCHHHHHCCCCEEECCCCCCCEEE VRNKMRASNPLPLPKWFPIHTSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQA EECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHH CAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPKDDPKLLSALTSFNPFPNKAD HHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHH VMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA HCCHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHH MWDLSRKI HHHHHHCC >Mature Secondary Structure TETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTT CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH AEALREQLVRDEAFWTGVQDMFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGS HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCHHHCCCCC GYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGIDWQRGDVVVTTNHEHGGGDT CCHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCEEEEEECEECCCCEEEEECCCCCCCCC PLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG CEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILI CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCHHHHHCCCCEEECCCCCCCEEE VRNKMRASNPLPLPKWFPIHTSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQA EECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHH CAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPKDDPKLLSALTSFNPFPNKAD HHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHH VMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA HCCHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHH MWDLSRKI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8437592 [H]