Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is cefD [H]

Identifier: 120609815

GI number: 120609815

Start: 1231831

End: 1233297

Strand: Direct

Name: cefD [H]

Synonym: Aave_1124

Alternate gene names: 120609815

Gene position: 1231831-1233297 (Clockwise)

Preceding gene: 120609814

Following gene: 120609817

Centisome position: 23.01

GC content: 66.8

Gene sequence:

>1467_bases
ATGACCGAAACATCCCCTGTGGCGGCCGGTGCCGCCTGCCGCATCGAACCTGCCGCCGCGACCGAACCGCGCTGGAGCGC
CAAGCGCCGCGACTTTCTGCGCATGATGGGTTATGGCGCCGGCGCGGCCACGCTCGGCCCGCTGGTGGCCGCGTGCGGCA
GCAGCGGCGCCCAGACCACCGCCGAGGCCCTGCGCGAGCAGCTCGTGCGCGACGAGGCTTTCTGGACCGGCGTGCAGGAC
ATGTTCGTCCTCAAGCCCGAGAAAACCTACATGAACATCGGTACCGGCGGCTCCATGCCCAAACTGGTGCTCGACGTCTT
CGATACCGAGAACCGCAAGAAGGCCGCCGATTCGGGCAGCGGCTACGGCAACCTGCTCGACCTGCGCAAGCAGGTGGCCC
CGGGCTTCGGCGTGGATGCGGACGAGCTCGCCTTCTCCGCCAACACGTCCTCTGGCATGTGCCATGCCATCCTCGGCATC
GACTGGCAGCGCGGCGACGTGGTCGTGACCACCAACCACGAGCACGGCGGCGGCGACACGCCCCTGAAGATCGCCACCGA
CCGCTACGGCATCGAGGTTTCGCGCATCGAGATGCCCGTGGGCAACAACCAGACCGCGGCCACCTACGTGAACCTGTTCG
ACGAGCGCATCCGCGCGCTCAAGGCGCAGGGCAAACGCGTGCGGGCGATGATGTGGTCCTCGCCCACCTACAAGACCGGG
ACCATGCTGCCGATCGCGGACCTGATGGGCGTGGTGAAGGCGCACGGGCTCATCAGCATCGTGGACGGCGCGCACCTGCC
GGGCATGATGGCCTACAACTATGCCGAGCTGGGCATGGACTTCATGTCCGGCGCCGGGCACAAGTGGCAGTGCGGCCCGG
GCTCCACCGGCATCCTGATCGTGCGCAACAAGATGCGGGCCTCCAACCCGCTGCCCCTGCCCAAGTGGTTTCCGATCCAC
ACGAGTTCCTACCCCGCGAAGGACCGCACCACCAACGGCACCGAAACCTACGACATCGCCGCCACCATCACCAGCTGCGG
CAGCCTGCACACGCCGATGTTCATGGCGCTCGCCCAGGCCTGCGCGCAATGGGACGGCATCGGGCGCAAGAAGATCGAGA
CCTACGACCTCACGCTCTCGTCCTACCTCAAGGAAAAGATCGCCGAGCGCTGGGGCATCGACGCGCTGTACTCGCCCAAG
GACGACCCGAAGCTGCTGTCCGCGCTCACGTCCTTCAACCCGTTCCCCAACAAGGCGGACGTGATGAACGCGCAGAAGGC
GAGTGCCTTCGTCTCGCGCATGCAGAGCGACTACGCCCAGGGGTTCGTGATCCGCAGCGCGGACTTCCCCGTCATCGGGG
CGCCGTCCAACCACTACGGCATCCGCGTCTCCACGCACCTCTGGCACGACGCGCGCGACATCGACCTGCTGGTCGATGCC
ATGTGGGATCTGTCGCGCAAGATCTGA

Upstream 100 bases:

>100_bases
GCCACCGTCGAGGTCGCGCGCCTGCCGCGCGACGTGAAGATCGAGATCGCGGCCATCGTCGGGCGCCGCTGAGCCACCGG
ACCGATTCCAGGAGATTCCC

Downstream 100 bases:

>100_bases
CCGTCCCCGCGGCGACGCCCCATGCAATGAAAAAAAGAGCGCGGGAATCGCTTCCCGCGCTCTTTGTCCTGCAGGAGGCT
CGCGTCAGAAGCGGTGGCGG

Product: class V aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MTETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTTAEALREQLVRDEAFWTGVQD
MFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGSGYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGI
DWQRGDVVVTTNHEHGGGDTPLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG
TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILIVRNKMRASNPLPLPKWFPIH
TSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQACAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPK
DDPKLLSALTSFNPFPNKADVMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA
MWDLSRKI

Sequences:

>Translated_488_residues
MTETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTTAEALREQLVRDEAFWTGVQD
MFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGSGYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGI
DWQRGDVVVTTNHEHGGGDTPLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG
TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILIVRNKMRASNPLPLPKWFPIH
TSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQACAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPK
DDPKLLSALTSFNPFPNKADVMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA
MWDLSRKI
>Mature_487_residues
TETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTTAEALREQLVRDEAFWTGVQDM
FVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGSGYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGID
WQRGDVVVTTNHEHGGGDTPLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTGT
MLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILIVRNKMRASNPLPLPKWFPIHT
SSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQACAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPKD
DPKLLSALTSFNPFPNKADVMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDAM
WDLSRKI

Specific function: Catalyzes the reversible isomerization between isopenicillin N and penicillin N [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =5.1.1.17 [H]

Molecular weight: Translated: 53035; Mature: 52904

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTT
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
AEALREQLVRDEAFWTGVQDMFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGS
HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCHHHCCCCC
GYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGIDWQRGDVVVTTNHEHGGGDT
CCHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCEEEEEECEECCCCEEEEECCCCCCCCC
PLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG
CEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILI
CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCHHHHHCCCCEEECCCCCCCEEE
VRNKMRASNPLPLPKWFPIHTSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQA
EECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHH
CAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPKDDPKLLSALTSFNPFPNKAD
HHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
VMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA
HCCHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHH
MWDLSRKI
HHHHHHCC
>Mature Secondary Structure 
TETSPVAAGAACRIEPAAATEPRWSAKRRDFLRMMGYGAGAATLGPLVAACGSSGAQTT
CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
AEALREQLVRDEAFWTGVQDMFVLKPEKTYMNIGTGGSMPKLVLDVFDTENRKKAADSGS
HHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCHHHCCCCC
GYGNLLDLRKQVAPGFGVDADELAFSANTSSGMCHAILGIDWQRGDVVVTTNHEHGGGDT
CCHHHHHHHHHHCCCCCCCHHHHEEECCCCCCCEEEEEECEECCCCEEEEECCCCCCCCC
PLKIATDRYGIEVSRIEMPVGNNQTAATYVNLFDERIRALKAQGKRVRAMMWSSPTYKTG
CEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
TMLPIADLMGVVKAHGLISIVDGAHLPGMMAYNYAELGMDFMSGAGHKWQCGPGSTGILI
CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCHHHHHCCCCEEECCCCCCCEEE
VRNKMRASNPLPLPKWFPIHTSSYPAKDRTTNGTETYDIAATITSCGSLHTPMFMALAQA
EECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHH
CAQWDGIGRKKIETYDLTLSSYLKEKIAERWGIDALYSPKDDPKLLSALTSFNPFPNKAD
HHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
VMNAQKASAFVSRMQSDYAQGFVIRSADFPVIGAPSNHYGIRVSTHLWHDARDIDLLVDA
HCCHHHHHHHHHHHHHHHHCCEEEECCCCCEECCCCCCCEEEEEEEECCCCCHHHHHHHH
MWDLSRKI
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8437592 [H]