Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is yjgF [C]

Identifier: 120609814

GI number: 120609814

Start: 1231332

End: 1231802

Strand: Direct

Name: yjgF [C]

Synonym: Aave_1123

Alternate gene names: 120609814

Gene position: 1231332-1231802 (Clockwise)

Preceding gene: 120609810

Following gene: 120609815

Centisome position: 23.0

GC content: 70.49

Gene sequence:

>471_bases
ATGGATATTCGGAATCCCCTGCCCCGGGGCCTGGCGCTGTGCGGTGCCGCGCTCGCGGCCGCGCTGCTGGCGGGGTGCGC
GGCACCCGCCCAGCGGGAGGTGCTCTCCACCACCCAGATCTACCCCGCGATCGGGCCCTACTCGCAGATGGTGGCGCACG
GCAACACGCTGTACTTTTCGGGCGTGCTGCCCCTCAACGCCGCCGGCAACGCGGTGCAGGGCACCACCATCGAGGAGCAG
ACCCGCGCCGTGCTCGATTTCATCGGCGCCAAGCTGCGCTCCCAGGGGCTGTCGTATGCCGACGTGCTCTCCACCACGGT
GTACATGAAGGACCTGGGCGAGTTCGCCGCCATGAACAAGGTGTACGGCGAGTACTTCCGCAGCGCGGCGCCCGCCCGCG
CCACCGTCGAGGTCGCGCGCCTGCCGCGCGACGTGAAGATCGAGATCGCGGCCATCGTCGGGCGCCGCTGA

Upstream 100 bases:

>100_bases
CGGGTGCGTGGCGGTATGGAAAAAGGGGGGCGCCTGCAGTGCGCGGTACCCCCCGTGATATTTCCGTGCCATGTCTGCGT
CGTTGAACGGAAGGAATGTC

Downstream 100 bases:

>100_bases
GCCACCGGACCGATTCCAGGAGATTCCCATGACCGAAACATCCCCTGTGGCGGCCGGTGCCGCCTGCCGCATCGAACCTG
CCGCCGCGACCGAACCGCGC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFSGVLPLNAAGNAVQGTTIEEQ
TRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNKVYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR

Sequences:

>Translated_156_residues
MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFSGVLPLNAAGNAVQGTTIEEQ
TRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNKVYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR
>Mature_156_residues
MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFSGVLPLNAAGNAVQGTTIEEQ
TRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNKVYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=40.1639344262295, Blast_Score=90, Evalue=8e-19,
Organism=Escherichia coli, GI87082396, Length=117, Percent_Identity=45.2991452991453, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=36.2204724409449, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI87081979, Length=104, Percent_Identity=36.5384615384615, Blast_Score=64, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=44.0944881889764, Blast_Score=100, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=44.0944881889764, Blast_Score=100, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=44.0944881889764, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=33.0508474576271, Blast_Score=70, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=32.0388349514563, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=33.8842975206612, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 16529; Mature: 16529

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEE
GVLPLNAAGNAVQGTTIEEQTRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR
HHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCC
>Mature Secondary Structure
MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFS
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEE
GVLPLNAAGNAVQGTTIEEQTRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
VYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR
HHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]