Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yjgF [C]
Identifier: 120609814
GI number: 120609814
Start: 1231332
End: 1231802
Strand: Direct
Name: yjgF [C]
Synonym: Aave_1123
Alternate gene names: 120609814
Gene position: 1231332-1231802 (Clockwise)
Preceding gene: 120609810
Following gene: 120609815
Centisome position: 23.0
GC content: 70.49
Gene sequence:
>471_bases ATGGATATTCGGAATCCCCTGCCCCGGGGCCTGGCGCTGTGCGGTGCCGCGCTCGCGGCCGCGCTGCTGGCGGGGTGCGC GGCACCCGCCCAGCGGGAGGTGCTCTCCACCACCCAGATCTACCCCGCGATCGGGCCCTACTCGCAGATGGTGGCGCACG GCAACACGCTGTACTTTTCGGGCGTGCTGCCCCTCAACGCCGCCGGCAACGCGGTGCAGGGCACCACCATCGAGGAGCAG ACCCGCGCCGTGCTCGATTTCATCGGCGCCAAGCTGCGCTCCCAGGGGCTGTCGTATGCCGACGTGCTCTCCACCACGGT GTACATGAAGGACCTGGGCGAGTTCGCCGCCATGAACAAGGTGTACGGCGAGTACTTCCGCAGCGCGGCGCCCGCCCGCG CCACCGTCGAGGTCGCGCGCCTGCCGCGCGACGTGAAGATCGAGATCGCGGCCATCGTCGGGCGCCGCTGA
Upstream 100 bases:
>100_bases CGGGTGCGTGGCGGTATGGAAAAAGGGGGGCGCCTGCAGTGCGCGGTACCCCCCGTGATATTTCCGTGCCATGTCTGCGT CGTTGAACGGAAGGAATGTC
Downstream 100 bases:
>100_bases GCCACCGGACCGATTCCAGGAGATTCCCATGACCGAAACATCCCCTGTGGCGGCCGGTGCCGCCTGCCGCATCGAACCTG CCGCCGCGACCGAACCGCGC
Product: endoribonuclease L-PSP
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFSGVLPLNAAGNAVQGTTIEEQ TRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNKVYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR
Sequences:
>Translated_156_residues MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFSGVLPLNAAGNAVQGTTIEEQ TRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNKVYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR >Mature_156_residues MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFSGVLPLNAAGNAVQGTTIEEQ TRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNKVYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR
Specific function: Unknown
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RutC family [H]
Homologues:
Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=40.1639344262295, Blast_Score=90, Evalue=8e-19, Organism=Escherichia coli, GI87082396, Length=117, Percent_Identity=45.2991452991453, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=36.2204724409449, Blast_Score=88, Evalue=3e-19, Organism=Escherichia coli, GI87081979, Length=104, Percent_Identity=36.5384615384615, Blast_Score=64, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=44.0944881889764, Blast_Score=100, Evalue=4e-22, Organism=Caenorhabditis elegans, GI71982075, Length=127, Percent_Identity=44.0944881889764, Blast_Score=100, Evalue=4e-22, Organism=Caenorhabditis elegans, GI25148896, Length=127, Percent_Identity=44.0944881889764, Blast_Score=100, Evalue=4e-22, Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=33.0508474576271, Blast_Score=70, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=32.0388349514563, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=33.8842975206612, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013813 - InterPro: IPR006175 - InterPro: IPR006056 - InterPro: IPR019897 [H]
Pfam domain/function: PF01042 Ribonuc_L-PSP [H]
EC number: NA
Molecular weight: Translated: 16529; Mature: 16529
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01094 UPF0076
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFS CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEE GVLPLNAAGNAVQGTTIEEQTRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNK CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR HHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCC >Mature Secondary Structure MDIRNPLPRGLALCGAALAAALLAGCAAPAQREVLSTTQIYPAIGPYSQMVAHGNTLYFS CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEE GVLPLNAAGNAVQGTTIEEQTRAVLDFIGAKLRSQGLSYADVLSTTVYMKDLGEFAAMNK CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VYGEYFRSAAPARATVEVARLPRDVKIEIAAIVGRR HHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]