Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is yedX [C]
Identifier: 120609807
GI number: 120609807
Start: 1223308
End: 1223658
Strand: Direct
Name: yedX [C]
Synonym: Aave_1116
Alternate gene names: 120609807
Gene position: 1223308-1223658 (Clockwise)
Preceding gene: 120609804
Following gene: 120609809
Centisome position: 22.85
GC content: 67.81
Gene sequence:
>351_bases ATGGGCCTCAGTACGCACGTTCTCGACACCATGCATGGCTGCCCGGCCGCGGGCATGGCGGTTTCGCTCTACGACACCGC AGGCGGCCAGGCCCGGCTGCTCAAGGAACTGGTGCTCAACCAGGACGGTCGCACCGATGCGCCGCTCTTCGACAACGCCA GCCTGCGTCCCGGCACCTACCGGCTGTCGTTCGAGGTGGGCGATTACTTTCGCGCGCGCGGCGTGGTGCTGCCCGAGCCG AACTTCCTCGACCGCGTGAGCCTGGACTTCGGCGTCGCCCATGCCGACCAGCACTACCACGTGCCGCTGCTGGTCAGCCC CTGGAGCTACTCGACCTACCGTGGCTCCTGA
Upstream 100 bases:
>100_bases GGCTGCGCGGCGGTGAGTCAACCCGTTCAGTGGCCAAGGCCGGCCGGCCTGCCTTGACGACTGAAGTTTGAACCAACTGA GACATATAAGGAGACGCCCC
Downstream 100 bases:
>100_bases ACTGCCGAGCCCGGAGGCGTCAGAGCTGGCCCTCGGTCAGCGTGTCGAGCTGGAACCGGCCCGACTTGTGCCAGAGCCAG GTGTCGGTATAGGTCACGCG
Product: transthyretin
Products: NA
Alternate protein names: HIU hydrolase; HIUHase [H]
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MGLSTHVLDTMHGCPAAGMAVSLYDTAGGQARLLKELVLNQDGRTDAPLFDNASLRPGTYRLSFEVGDYFRARGVVLPEP NFLDRVSLDFGVAHADQHYHVPLLVSPWSYSTYRGS
Sequences:
>Translated_116_residues MGLSTHVLDTMHGCPAAGMAVSLYDTAGGQARLLKELVLNQDGRTDAPLFDNASLRPGTYRLSFEVGDYFRARGVVLPEP NFLDRVSLDFGVAHADQHYHVPLLVSPWSYSTYRGS >Mature_115_residues GLSTHVLDTMHGCPAAGMAVSLYDTAGGQARLLKELVLNQDGRTDAPLFDNASLRPGTYRLSFEVGDYFRARGVVLPEPN FLDRVSLDFGVAHADQHYHVPLLVSPWSYSTYRGS
Specific function: Catalyzes the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) [H]
COG id: COG2351
COG function: function code R; Transthyretin-like protein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788281, Length=114, Percent_Identity=36.8421052631579, Blast_Score=80, Evalue=5e-17, Organism=Caenorhabditis elegans, GI115532920, Length=116, Percent_Identity=39.6551724137931, Blast_Score=79, Evalue=6e-16, Organism=Caenorhabditis elegans, GI115532922, Length=116, Percent_Identity=39.6551724137931, Blast_Score=79, Evalue=6e-16, Organism=Caenorhabditis elegans, GI115534555, Length=116, Percent_Identity=38.7931034482759, Blast_Score=76, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014306 - InterPro: IPR000895 [H]
Pfam domain/function: PF00576 Transthyretin [H]
EC number: =3.5.2.17 [H]
Molecular weight: Translated: 12726; Mature: 12595
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: PS00768 TRANSTHYRETIN_1 ; PS00769 TRANSTHYRETIN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLSTHVLDTMHGCPAAGMAVSLYDTAGGQARLLKELVLNQDGRTDAPLFDNASLRPGTY CCCCCCHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE RLSFEVGDYFRARGVVLPEPNFLDRVSLDFGVAHADQHYHVPLLVSPWSYSTYRGS EEEEECCCCHHHCCEECCCCCCCCEEECCCCEEECCCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure GLSTHVLDTMHGCPAAGMAVSLYDTAGGQARLLKELVLNQDGRTDAPLFDNASLRPGTY CCCCCHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE RLSFEVGDYFRARGVVLPEPNFLDRVSLDFGVAHADQHYHVPLLVSPWSYSTYRGS EEEEECCCCHHHCCEECCCCCCCCEEECCCCEEECCCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]