Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is nisX1 [H]
Identifier: 120609795
GI number: 120609795
Start: 1209834
End: 1210928
Strand: Reverse
Name: nisX1 [H]
Synonym: Aave_1103
Alternate gene names: 120609795
Gene position: 1210928-1209834 (Counterclockwise)
Preceding gene: 120609796
Following gene: 120609793
Centisome position: 22.62
GC content: 69.68
Gene sequence:
>1095_bases ATGATCGGCCTGCAAGATCGCCAGCAACTGGCCCGCGACATCCAGATCGCCCACGACAGCGGCGCGCGGCTGCACCTGGC CTGTCAGGTCGCCGGTATCGACGTGCGCACGCTGCAGCGCTACAAGGCTGCGGGTGGGCTGGCCCAGGGCGATGCACGGC CTCAGGCGCTGCGCCCCACGCCAAGCCATGCCTTGACCGAGGCCGAACGCCAGCGGCTGGTGCAGGTGGCCAACGCACCG CGCTTTGCCGACGTGCCGCCGGCGCGCATCGTGCCCATGTTGGCCGACGAGGGTGTCTACCTGGCCAGCGAATCGAGCTT CGCGCGGGTGCTGCGTGCGCACGGGCAGAACGCCCATCGCGGTCGCGCCCGATCGCCGCAGGCCAGCCGCGCGCCCAGCA CCCATGTGGCCACGGCGCCCGGCCAGGTGTGGTGCTGGGACATGACCTATCTGCCGGCCCGCGTCGCCGGGCGCTGGTTC CACCTGTACCTGATCATGGATCTGTACAGCCGCAAGATCGTGGGCTTCGAGGTGCACGACAGCGACCAGGCCGAGCATGC CGCACGACTGGTGCGCCGCACGGCGCTGGCCGAGGGCATCGCCGCGCGCGCCGACAAGCCAGTGCTGCACGGCGACAACG GAGCCACGTTGAAGGCCACCACGGTGCTGGCCATGCTGCACTGGTTGGGCGTCAAGCCTTCGTACTCGCGCCCCCGCGTG AGTGACGACAACGCCTTCGTGGAAAGCCTGTTCCGTACCGCCAAATACCGCCCCGAGTTCCCCGCCAGCGGCGGCTTCGA CGATCTGGACCAGGCACGCCAGTGGGCCAGCGGCTTCGTGCATTGGTACAACTGCGAGCACCGCCACAGCGCGATCGGCT ACGTCACGCCGACGCAGCGCCATGCCGGGCAGGACCAGGCCATCCTGCAGGCTCGCCATCACCTTTACACCCAGGCCCGA CAGCGCAACCCCGCGCGCTGGTCGGGCAGCACCCGCAACTGGGCGCCGGTCCAATCGGTCACGCTCAACCCTGAGCGCGA CGGCATCTCCAATGCCGCGGCGACCGCATCGAATACGCAGCCTCGGGCTGCTTGA
Upstream 100 bases:
>100_bases AGCGCGACCTGCGTCGCAAGGACCGGGCACTGGCGGAAACCGCGGCGCTCTTGGTGCTATCAAAAAAGCTCGAGGCGATC TTGCCCGGGGACGAGGACGA
Downstream 100 bases:
>100_bases TCGACGCGACAACTACCTTGACATGCTCCGGCCATGAGGCTTCGTAATAATCGAGCCGGTACACATGCCGCGGGCTATAG TGGCTGCGATCGTACCTTGG
Product: integrase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPTPSHALTEAERQRLVQVANAP RFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHRGRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWF HLYLIMDLYSRKIVGFEVHDSDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV SDDNAFVESLFRTAKYRPEFPASGGFDDLDQARQWASGFVHWYNCEHRHSAIGYVTPTQRHAGQDQAILQARHHLYTQAR QRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQPRAA
Sequences:
>Translated_364_residues MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPTPSHALTEAERQRLVQVANAP RFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHRGRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWF HLYLIMDLYSRKIVGFEVHDSDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV SDDNAFVESLFRTAKYRPEFPASGGFDDLDQARQWASGFVHWYNCEHRHSAIGYVTPTQRHAGQDQAILQARHHLYTQAR QRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQPRAA >Mature_364_residues MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPTPSHALTEAERQRLVQVANAP RFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHRGRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWF HLYLIMDLYSRKIVGFEVHDSDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV SDDNAFVESLFRTAKYRPEFPASGGFDDLDQARQWASGFVHWYNCEHRHSAIGYVTPTQRHAGQDQAILQARHHLYTQAR QRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQPRAA
Specific function: Involved in the transposition of the insertion sequence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001584 - InterPro: IPR012337 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 40236; Mature: 40236
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPT CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC PSHALTEAERQRLVQVANAPRFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHR CCHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHCCCCCEEEECCHHHHHHHHHCCCCCCC GRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWFHLYLIMDLYSRKIVGFEVHD CCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC SDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCC SDDNAFVESLFRTAKYRPEFPASGGFDDLDQARQWASGFVHWYNCEHRHSAIGYVTPTQR CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEECCCCHH HAGQDQAILQARHHLYTQARQRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQ HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCC PRAA CCCC >Mature Secondary Structure MIGLQDRQQLARDIQIAHDSGARLHLACQVAGIDVRTLQRYKAAGGLAQGDARPQALRPT CCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC PSHALTEAERQRLVQVANAPRFADVPPARIVPMLADEGVYLASESSFARVLRAHGQNAHR CCHHHHHHHHHHHHHHHCCCCCCCCCHHHEEHHCCCCCEEEECCHHHHHHHHHCCCCCCC GRARSPQASRAPSTHVATAPGQVWCWDMTYLPARVAGRWFHLYLIMDLYSRKIVGFEVHD CCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC SDQAEHAARLVRRTALAEGIAARADKPVLHGDNGATLKATTVLAMLHWLGVKPSYSRPRV CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCC SDDNAFVESLFRTAKYRPEFPASGGFDDLDQARQWASGFVHWYNCEHRHSAIGYVTPTQR CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEECCCCHH HAGQDQAILQARHHLYTQARQRNPARWSGSTRNWAPVQSVTLNPERDGISNAAATASNTQ HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCC PRAA CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1482189; 11337471; 1482192 [H]