Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is ydhC [H]
Identifier: 120609791
GI number: 120609791
Start: 1205039
End: 1205734
Strand: Reverse
Name: ydhC [H]
Synonym: Aave_1099
Alternate gene names: 120609791
Gene position: 1205734-1205039 (Counterclockwise)
Preceding gene: 120609792
Following gene: 120609790
Centisome position: 22.53
GC content: 73.42
Gene sequence:
>696_bases ATGGGCATCAGCCAGAGCCAGATCGCACAGCAGGTCGTCGAATCCATCCTGGCGCAGAAGCTGGCGCCCGGCGAACGGCT GGGCGAGCAGGACCTGGCCGACCTGTTCGGCGTCAGCCGCACCATGGTGCGGGAAGCGCTGATGCAACTGCAGGCCCGCG GTTTCGTCGAGGTGCGCGCGCGGCGCGGCTGGTACGTGGTGGAGCCGTCGGTGGAGGATGCGCGCGACGCCTTCTCCGCG CGCCGCATCATCGAATCCGGCATCCTGGCCGACGCCGGCCGGCCGCTGCAGCAGACCGTGGTGCCGCGCCTGCGCGCGCA CATCGACGAGGAGCGGCGCGCGATCGAAGGCGCGGATGCCGCGACGCGCGCCTTCCTGCTGGCCGATTTCCACGTCTGCC TGGCCGAGGCGCTGGGCCACCGCACGCTCAGCGACCTGCTGCGCGACCTCACGGCCCGCACCACGCTGGCCGCGTCGCTC TACCAGTCGCAGCACGGCGCCAGCCAGTCCTGCGCGGAACACGCGGCCATCGTCGAGGCACTGGAATCCGGCGACACCGC CCTGGCCCGGGAGCGCATGCTGGCGCACATCGGCCACGTGGAGGACGCGCTCGACCCGGACCAGCCCCTGGTGCGCGACC GGCTGCGCGAATCGCTCGCCCCCCTGTCCGCGGCGGCCCGGCCCGCGGCGGACTGA
Upstream 100 bases:
>100_bases CGCACCGTGGCGGGCTTCACGCTCGACGAGCGCTCCGCGCCGGAGTCCCACGCACTGGCCCTGCCGCGCTGAGCGCGGAC GGCCTCCCCCGACGGCACCG
Downstream 100 bases:
>100_bases ACGCCCCGCCTGTCTCCTGCACCTTGCACCGCCCGTTGGCAAGCGGGTAAGCACCGAGCCGCACGGGCGCTCCTGGCCTT TGAATGCATCCATTTTTTGT
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MGISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRARRGWYVVEPSVEDARDAFSA RRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADAATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASL YQSQHGASQSCAEHAAIVEALESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD
Sequences:
>Translated_231_residues MGISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRARRGWYVVEPSVEDARDAFSA RRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADAATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASL YQSQHGASQSCAEHAAIVEALESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD >Mature_230_residues GISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRARRGWYVVEPSVEDARDAFSAR RIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADAATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASLY QSQHGASQSCAEHAAIVEALESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD
Specific function: Repressor For The Uxurba Operon. [C]
COG id: COG1802
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1790780, Length=215, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011711 - InterPro: IPR000485 - InterPro: IPR000524 - InterPro: IPR011991 [H]
Pfam domain/function: PF07729 FCD; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 25143; Mature: 25012
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRA CCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH RRGWYVVEPSVEDARDAFSARRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADA CCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH ATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASLYQSQHGASQSCAEHAAIVEA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD HHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GISQSQIAQQVVESILAQKLAPGERLGEQDLADLFGVSRTMVREALMQLQARGFVEVRA CCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH RRGWYVVEPSVEDARDAFSARRIIESGILADAGRPLQQTVVPRLRAHIDEERRAIEGADA CCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH ATRAFLLADFHVCLAEALGHRTLSDLLRDLTARTTLAASLYQSQHGASQSCAEHAAIVEA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LESGDTALARERMLAHIGHVEDALDPDQPLVRDRLRESLAPLSAAARPAAD HHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]