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The map label for this gene is ydfH [C]

Identifier: 120609788

GI number: 120609788

Start: 1201620

End: 1202453

Strand: Reverse

Name: ydfH [C]

Synonym: Aave_1096

Alternate gene names: 120609788

Gene position: 1202453-1201620 (Counterclockwise)

Preceding gene: 120609789

Following gene: 120609787

Centisome position: 22.46

GC content: 72.66

Gene sequence:

>834_bases
ATGCCCCGCGCCGCCCAGACTCCTGTTCCCGCTCCTGCCTCCCCGCCCACGCCCCACCGCGCATCCACCGCCGCCCCCGC
ACCGGCACGCAAGGCGCGTGCGCCCCGGCCTCCCGCACTGGCGCAGCGCGCGGACGCGCCCGCCGCCCCGGAGGCCGCGC
AGGTCTCCATCGAAGGCATCGCGCGCGACCTGGCGACCGCGATCGTCGAGAAACGCCTGCCGCCCGGCACCTGGCTGCGC
GAGGAAGCGCTGGGGCGCATCTACTCCGTGAGCCGCACCAAGGTGCGCGCCGCGCTGGTCATGCTGGCCAAGGACCGGCT
GATTGAGACCATTCCCGACAAGGGCTCGTTCGTGAGCCGGCCCAGCGTGCAGGAGGCGCGCGAGGTCTTCGCCGTGCGCC
GCATCCTGGAGAGCGAGGTCGTGCGGCTGTTCGTGGCCCGTGCGAAGCGGGCCGACTACCAGCTGCTGGAGCAGCACATC
CGCTTCGAGCGCACGGCGCTCAAGGCCGGCCCCGCCACCGGCAGCGTGCAGGAAAAGCTGCTGGGCGACTTCCACGTCGC
GCTGGCCGAGGCGGCGGGCAACCACACGCTGGCCCGGCTGGTCCAGGAGATGGTGGCGCGCAGCTCGCTCATCGCGATGC
TCTACCACTCGTCCAACGACGCGCACTGCTCCTCCGGGGAGCATGCCGAGTTCCTGCGCGTGTGCCGCGGCGGCGATGCC
GAGGCGGCGGTCGCCTGCATGGTGGACCACCTCGACCGCATCGAGGCCAGCCTGGAACTGGACAGCGAACGCGCCGACCG
GCAACTGGACCTGGTCAAGGCCCTGCTGTCCTGA

Upstream 100 bases:

>100_bases
CGGCACTGCGGCGCGCCTGATCGCGGCGGGGCCGCGGCCGATGCCGCCCCGCGGCGGTGCCTTTGCGCGGGCAGCCACCG
CTTGCCGCGACAATCCCGCC

Downstream 100 bases:

>100_bases
CCCTCGCGAGACATCCGTGGCCCGTCCCGCGTGGGTCGAATCGCTGCCCACCGTGGGTGCGGTGGCGGCCACCGGCATCC
GCATCCCGGGCGCGGTGATT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; GntR Family Regulatory Protein; Transcriptional Regulator Protein GntR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein; Transcriptional Regulator Gntr Family; Transcription Regulator Protein; FCD Domain Protein; GntR Domain-Containing Protein; Transcriptional Regulator GntR; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family; Bacterial Regulatory Protein; GntR-Family Protein Transcriptional Regulator

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MPRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGIARDLATAIVEKRLPPGTWLR
EEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSRPSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHI
RFERTALKAGPATGSVQEKLLGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA
EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS

Sequences:

>Translated_277_residues
MPRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGIARDLATAIVEKRLPPGTWLR
EEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSRPSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHI
RFERTALKAGPATGSVQEKLLGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA
EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS
>Mature_276_residues
PRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGIARDLATAIVEKRLPPGTWLRE
EALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSRPSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHIR
FERTALKAGPATGSVQEKLLGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDAE
AAVACMVDHLDRIEASLELDSERADRQLDLVKALLS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29986; Mature: 29854

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHH
ARDLATAIVEKRLPPGTWLREEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHIRFERTALKAGPATGSVQEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCH
EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
PRAAQTPVPAPASPPTPHRASTAAPAPARKARAPRPPALAQRADAPAAPEAAQVSIEGI
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHH
ARDLATAIVEKRLPPGTWLREEALGRIYSVSRTKVRAALVMLAKDRLIETIPDKGSFVSR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PSVQEAREVFAVRRILESEVVRLFVARAKRADYQLLEQHIRFERTALKAGPATGSVQEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LGDFHVALAEAAGNHTLARLVQEMVARSSLIAMLYHSSNDAHCSSGEHAEFLRVCRGGDA
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCH
EAAVACMVDHLDRIEASLELDSERADRQLDLVKALLS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA