Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
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Accession | NC_008752 |
Length | 5,352,772 |
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The map label for this gene is tadA [H]
Identifier: 120609775
GI number: 120609775
Start: 1187093
End: 1187602
Strand: Reverse
Name: tadA [H]
Synonym: Aave_1083
Alternate gene names: 120609775
Gene position: 1187602-1187093 (Counterclockwise)
Preceding gene: 120609776
Following gene: 120609774
Centisome position: 22.19
GC content: 71.76
Gene sequence:
>510_bases ATGAGCGCCATGCCCCTGCCCGAGGAAGTGCCGCTCGACGAGCGCGACGGCCGCTACCTGCGGCACGCCATCGCCCTGGC GGACAAGGCCCGCGCGCGCGGTAACCGGCCCTTCGGCGCGGTGATCGTGGGCGGCGACGGCACGGTGCTCGCGGAGGCCT GGAACGCCAACGGAGAAACCGGCGACTGCACGGCGCACGCGGAAACCTCCGCCATCCGCGTGGCGAGCCCGCAGCATGCG CGCGAGGTCCTGGCCCGCGCCACGCTGTACTCGTCGGGCGAGCCGTGCGTGATGTGCGCGGGCGCCATTTTCTGGGCCAA CATCGGCCGCGTGGTGTATGGCATCGATGCGGTGCGCCTGCGCGGATTCCGCGGCGAGCGGCAGGACCAGCGCGATGCGG AACTCTCCTGCCGCGACGTATTCGACGCTTCGCCCCACCCGATCGAATGCATCGGCCCGGCCCTGGTCGCCGAAGCCTGC GCATCGCACGAAGGCGCCTGGAAAGCCTGA
Upstream 100 bases:
>100_bases AGATCGACGAAGTGGCCACCGTGTTCCAGCTGGCCGCGAAGCCAGCGCCCGAGCGGGTGTACAACCCCGGCTTCCTGCCC GCGGGCGCGAAAGGCGCCGC
Downstream 100 bases:
>100_bases CGCAGGTGTCCGCCGTCCGGCCCCGGGGCTCTGCGGGCCGCGGCTATCATGCGGCGCTCGCTCCAACCCACCAACGACCG CAAGGCACCCACGACCGATG
Product: CMP/dCMP deaminase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 169; Mature: 168
Protein sequence:
>169_residues MSAMPLPEEVPLDERDGRYLRHAIALADKARARGNRPFGAVIVGGDGTVLAEAWNANGETGDCTAHAETSAIRVASPQHA REVLARATLYSSGEPCVMCAGAIFWANIGRVVYGIDAVRLRGFRGERQDQRDAELSCRDVFDASPHPIECIGPALVAEAC ASHEGAWKA
Sequences:
>Translated_169_residues MSAMPLPEEVPLDERDGRYLRHAIALADKARARGNRPFGAVIVGGDGTVLAEAWNANGETGDCTAHAETSAIRVASPQHA REVLARATLYSSGEPCVMCAGAIFWANIGRVVYGIDAVRLRGFRGERQDQRDAELSCRDVFDASPHPIECIGPALVAEAC ASHEGAWKA >Mature_168_residues SAMPLPEEVPLDERDGRYLRHAIALADKARARGNRPFGAVIVGGDGTVLAEAWNANGETGDCTAHAETSAIRVASPQHAR EVLARATLYSSGEPCVMCAGAIFWANIGRVVYGIDAVRLRGFRGERQDQRDAELSCRDVFDASPHPIECIGPALVAEACA SHEGAWKA
Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]
COG id: COG0590
COG function: function code FJ; Cytosine/adenosine deaminases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]
Homologues:
Organism=Escherichia coli, GI145693172, Length=96, Percent_Identity=44.7916666666667, Blast_Score=74, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17541138, Length=119, Percent_Identity=36.1344537815126, Blast_Score=70, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17555996, Length=114, Percent_Identity=35.0877192982456, Blast_Score=62, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]
EC number: NA
Molecular weight: Translated: 18055; Mature: 17924
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00903 CYT_DCMP_DEAMINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAMPLPEEVPLDERDGRYLRHAIALADKARARGNRPFGAVIVGGDGTVLAEAWNANGET CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCC GDCTAHAETSAIRVASPQHAREVLARATLYSSGEPCVMCAGAIFWANIGRVVYGIDAVRL CCEEECCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCHHHHEE RGFRGERQDQRDAELSCRDVFDASPHPIECIGPALVAEACASHEGAWKA ECCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SAMPLPEEVPLDERDGRYLRHAIALADKARARGNRPFGAVIVGGDGTVLAEAWNANGET CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCC GDCTAHAETSAIRVASPQHAREVLARATLYSSGEPCVMCAGAIFWANIGRVVYGIDAVRL CCEEECCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHCHHHHEE RGFRGERQDQRDAELSCRDVFDASPHPIECIGPALVAEACASHEGAWKA ECCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]