Click here to switch to the map view.

The map label for this gene is ccsB [H]

Identifier: 120609679

GI number: 120609679

Start: 1080701

End: 1082899

Strand: Direct

Name: ccsB [H]

Synonym: Aave_0985

Alternate gene names: 120609679

Gene position: 1080701-1082899 (Clockwise)

Preceding gene: 120609678

Following gene: 120609680

Centisome position: 20.19

GC content: 69.49

Gene sequence:

>2199_bases
ATGTCCGACACCGTCCACGGCCACCCGCATTCGTCCCGCACAGCACCCGCGCGGGCCCTGGTCGAGCTGCTGTCGTCCAT
GCGTTTCGCGATCTCGCTGCTCACGGTGATCTGCATCGCCTCGGTGATCGGCACCGTGCTCAAGCAGCACGAGCCCGCGG
CGAACTACGTGAACCAGTTCGGGCCCTTCTGGTCCGAGCTGTTCCTGGCACTGCGGCTGAATGCGGTGTACAGCGCGTGG
TGGTTCCTGCTGATCCTCGCCTTTCTGGTGACCAGCACTTCGCTGTGCATTGCCCGCAACGCGCCGCGCTATCTCGCCGA
CCTGCGCAGCTACAAGGAAAACGTCCGGGAGCAGAGCCTGAAGGCCTTCCACCACCGCGCGCACGCGGTGCTCGGCGCCG
AGGCGCCGGAAGCCGCGGCACGGCGCATCGGGGGGCTGCTGGCCGGCGGCGGCTGGAAGGTCCGCCTGCAGCAGCGTGAC
ACCGCCGCCGGGCCGGGAACGGGGTGGATGGTGGCCGCCAAGGCGGGGGCCGCCAACAAGATCGGCTATATCGCCGCGCA
CAGCGCCATCGTGCTCATCTGCCTGGGGGGCCTGCTGGACGGCGACCTGATCGTGCGCGCCCAGATGTGGCTCGGGGGCA
AGGCGCCGTACACTGGCGGAGGGATGGTTTCCGAGGTGGGGGCGGAGCACCGGCTCTCCGAACGCAATCCCACCTTCCGG
GGCAATCTGTTCGTGGCCGAGGGCACCCAGTCCGGCACCGCCATCCTGAACCAGTCCGACGGCGTGCTGCTGCAGGAGCT
TCCGTTTTCCATCGAACTGAAGAAATTCATCGTGGAGCACTACTCCACCGGCATGCCCAAGCTCTTCGCGAGCGAGATCG
TCATCCACGACAAGGCCACGGGCGAATCCGTGCCCGCCCGCGTGGAAGTGAACCACCCCGCCAGCTACCGCGGCATCGAG
ATCTACCAGTCGAGCTTCGACGACGGCGGCTCCCTGCTCAAGCTGCGGGCCGTGCCCATGGCGCCGGGCGTGCGGCCGTT
CGAGGTGGAAGGAACCGTGGGCGGCTCCACGCGCATCGAGCGCGCCGGCACCGGGGACAAGGGTGCGGATGCCGGGCAGG
CCCTCACGCTGGAATTTACGGGGCTGCGCACCATCAACGTCGAGAACTTCGGCGCTGTACCTGGGACTGGCGGTTCCGGC
GCGGATGTGCGCAAGGTGGACCTGCGGCATTCCATCGAGTCGCGCCTCGGGGCTGGCAACAAGACCGCCACGCCGAAAGA
GCTGCGCAACGTCGGCCCGAGCGTCACCTACAAGCTGCGCGACGCCGCCGGCCAGGCGCGCGAATTCCACAACTACATGC
TGCCGGTGGACACTGGCGACGGCCAGCCGGTGTTCCTGCTGGGCGTGCGGGAGACCCCGGCCGACCCCTTCCGGTTCCTG
CGCGTGCCAGTGGATGACCAGGGCCGAATGGATGGCTTCCTGCGCATGCGCATGGCGCTGGCCGACCCTGCACTCCGCGA
GCAGGCGGTGCGGCGCTACGTGGCCCATGCGGTGGACGGCTCCCGGCCCGAACTGGCCGATCAGCTGGCGCAGTCCACGC
TGCGCGCACTGTCGATCTTCGCCGGTGCCGCGGAGCCCGGCAAGACTGCCGCGGGCAGCCCGCAGCGCGGCGGGCTGCAG
GCCATCTCGGAATTCATGGAGGCGAACGTGCCTTCCGCCGAGCGCGAGCGGGCCGGCGAGGTGCTGATCCGCATCCTGAA
CGGCGCGCTGTTCGAGCTCGCCCAGCTGACGCGCGAGCGCGCGGGCCTCGCCCCCCTGCCGCAGGACGAGGCCACCCGCG
CCTTCATGACGCAGGCCGTGCTGTCGCTCAGCGATGCCCAGGCCTATCCCGCGCCGATGGCGTTCGAACTGGCGGATTTC
AAGCAGGTGCAGGCCAGCGTGTTCCAGGTGGCGCGCGCCCCGGGAAAGAACGTGGTGTACCTGGGCTGCGCGCTGCTGAT
CCTGGGCGTGTTCGCGATGCTCTACGTGCGCGAGCGGCGCGTATGGGTGTGGCTGGCGCCGGCCGGGAACGGCGACGGGG
CCGACGCCACCATGGCACTGTCCACCAACCGCAAGACCCTGGACGGCGACCGCGAATTCGCCCGGCTCACCGAGAAACTC
ATCGGGGCCCGGCCCCACCACGGAGGCATCACCGCATGA

Upstream 100 bases:

>100_bases
GGGCGGGCCCATCTGAACGGATGGCCCGCCTTTTCCGTTTTCAGGGCCCTGCCGCTCCCATCCTCCCCGCCAGCCGCACG
CTTTCCGCCTGTCCGTTTCC

Downstream 100 bases:

>100_bases
ACACGGCGACCACCACCATCACCCTGAGCGAAGGCTATTTCGCGCGCCGCAACTGGTTCGACTGGGTGTTCGCGGCCATC
GTGGCGGCGGGCGGCCTCTA

Product: ResB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 732; Mature: 731

Protein sequence:

>732_residues
MSDTVHGHPHSSRTAPARALVELLSSMRFAISLLTVICIASVIGTVLKQHEPAANYVNQFGPFWSELFLALRLNAVYSAW
WFLLILAFLVTSTSLCIARNAPRYLADLRSYKENVREQSLKAFHHRAHAVLGAEAPEAAARRIGGLLAGGGWKVRLQQRD
TAAGPGTGWMVAAKAGAANKIGYIAAHSAIVLICLGGLLDGDLIVRAQMWLGGKAPYTGGGMVSEVGAEHRLSERNPTFR
GNLFVAEGTQSGTAILNQSDGVLLQELPFSIELKKFIVEHYSTGMPKLFASEIVIHDKATGESVPARVEVNHPASYRGIE
IYQSSFDDGGSLLKLRAVPMAPGVRPFEVEGTVGGSTRIERAGTGDKGADAGQALTLEFTGLRTINVENFGAVPGTGGSG
ADVRKVDLRHSIESRLGAGNKTATPKELRNVGPSVTYKLRDAAGQAREFHNYMLPVDTGDGQPVFLLGVRETPADPFRFL
RVPVDDQGRMDGFLRMRMALADPALREQAVRRYVAHAVDGSRPELADQLAQSTLRALSIFAGAAEPGKTAAGSPQRGGLQ
AISEFMEANVPSAERERAGEVLIRILNGALFELAQLTRERAGLAPLPQDEATRAFMTQAVLSLSDAQAYPAPMAFELADF
KQVQASVFQVARAPGKNVVYLGCALLILGVFAMLYVRERRVWVWLAPAGNGDGADATMALSTNRKTLDGDREFARLTEKL
IGARPHHGGITA

Sequences:

>Translated_732_residues
MSDTVHGHPHSSRTAPARALVELLSSMRFAISLLTVICIASVIGTVLKQHEPAANYVNQFGPFWSELFLALRLNAVYSAW
WFLLILAFLVTSTSLCIARNAPRYLADLRSYKENVREQSLKAFHHRAHAVLGAEAPEAAARRIGGLLAGGGWKVRLQQRD
TAAGPGTGWMVAAKAGAANKIGYIAAHSAIVLICLGGLLDGDLIVRAQMWLGGKAPYTGGGMVSEVGAEHRLSERNPTFR
GNLFVAEGTQSGTAILNQSDGVLLQELPFSIELKKFIVEHYSTGMPKLFASEIVIHDKATGESVPARVEVNHPASYRGIE
IYQSSFDDGGSLLKLRAVPMAPGVRPFEVEGTVGGSTRIERAGTGDKGADAGQALTLEFTGLRTINVENFGAVPGTGGSG
ADVRKVDLRHSIESRLGAGNKTATPKELRNVGPSVTYKLRDAAGQAREFHNYMLPVDTGDGQPVFLLGVRETPADPFRFL
RVPVDDQGRMDGFLRMRMALADPALREQAVRRYVAHAVDGSRPELADQLAQSTLRALSIFAGAAEPGKTAAGSPQRGGLQ
AISEFMEANVPSAERERAGEVLIRILNGALFELAQLTRERAGLAPLPQDEATRAFMTQAVLSLSDAQAYPAPMAFELADF
KQVQASVFQVARAPGKNVVYLGCALLILGVFAMLYVRERRVWVWLAPAGNGDGADATMALSTNRKTLDGDREFARLTEKL
IGARPHHGGITA
>Mature_731_residues
SDTVHGHPHSSRTAPARALVELLSSMRFAISLLTVICIASVIGTVLKQHEPAANYVNQFGPFWSELFLALRLNAVYSAWW
FLLILAFLVTSTSLCIARNAPRYLADLRSYKENVREQSLKAFHHRAHAVLGAEAPEAAARRIGGLLAGGGWKVRLQQRDT
AAGPGTGWMVAAKAGAANKIGYIAAHSAIVLICLGGLLDGDLIVRAQMWLGGKAPYTGGGMVSEVGAEHRLSERNPTFRG
NLFVAEGTQSGTAILNQSDGVLLQELPFSIELKKFIVEHYSTGMPKLFASEIVIHDKATGESVPARVEVNHPASYRGIEI
YQSSFDDGGSLLKLRAVPMAPGVRPFEVEGTVGGSTRIERAGTGDKGADAGQALTLEFTGLRTINVENFGAVPGTGGSGA
DVRKVDLRHSIESRLGAGNKTATPKELRNVGPSVTYKLRDAAGQAREFHNYMLPVDTGDGQPVFLLGVRETPADPFRFLR
VPVDDQGRMDGFLRMRMALADPALREQAVRRYVAHAVDGSRPELADQLAQSTLRALSIFAGAAEPGKTAAGSPQRGGLQA
ISEFMEANVPSAERERAGEVLIRILNGALFELAQLTRERAGLAPLPQDEATRAFMTQAVLSLSDAQAYPAPMAFELADFK
QVQASVFQVARAPGKNVVYLGCALLILGVFAMLYVRERRVWVWLAPAGNGDGADATMALSTNRKTLDGDREFARLTEKLI
GARPHHGGITA

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 78597; Mature: 78466

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTVHGHPHSSRTAPARALVELLSSMRFAISLLTVICIASVIGTVLKQHEPAANYVNQF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GPFWSELFLALRLNAVYSAWWFLLILAFLVTSTSLCIARNAPRYLADLRSYKENVREQSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHH
KAFHHRAHAVLGAEAPEAAARRIGGLLAGGGWKVRLQQRDTAAGPGTGWMVAAKAGAANK
HHHHHHHHHHHCCCCHHHHHHHHCCEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCC
IGYIAAHSAIVLICLGGLLDGDLIVRAQMWLGGKAPYTGGGMVSEVGAEHRLSERNPTFR
CHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCCHHHHHCHHHHHHCCCCCEE
GNLFVAEGTQSGTAILNQSDGVLLQELPFSIELKKFIVEHYSTGMPKLFASEIVIHDKAT
CCEEEEECCCCCCEEEECCCCEEHHHCCCCHHHHHHHHHHHCCCCCHHHHHHEEEECCCC
GESVPARVEVNHPASYRGIEIYQSSFDDGGSLLKLRAVPMAPGVRPFEVEGTVGGSTRIE
CCCCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCEEE
RAGTGDKGADAGQALTLEFTGLRTINVENFGAVPGTGGSGADVRKVDLRHSIESRLGAGN
CCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCC
KTATPKELRNVGPSVTYKLRDAAGQAREFHNYMLPVDTGDGQPVFLLGVRETPADPFRFL
CCCCHHHHHHCCCCEEEEEHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCCCCCCHHEE
RVPVDDQGRMDGFLRMRMALADPALREQAVRRYVAHAVDGSRPELADQLAQSTLRALSIF
ECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AGAAEPGKTAAGSPQRGGLQAISEFMEANVPSAERERAGEVLIRILNGALFELAQLTRER
HCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLAPLPQDEATRAFMTQAVLSLSDAQAYPAPMAFELADFKQVQASVFQVARAPGKNVVY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEH
LGCALLILGVFAMLYVRERRVWVWLAPAGNGDGADATMALSTNRKTLDGDREFARLTEKL
HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
IGARPHHGGITA
HCCCCCCCCCCC
>Mature Secondary Structure 
SDTVHGHPHSSRTAPARALVELLSSMRFAISLLTVICIASVIGTVLKQHEPAANYVNQF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GPFWSELFLALRLNAVYSAWWFLLILAFLVTSTSLCIARNAPRYLADLRSYKENVREQSL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHH
KAFHHRAHAVLGAEAPEAAARRIGGLLAGGGWKVRLQQRDTAAGPGTGWMVAAKAGAANK
HHHHHHHHHHHCCCCHHHHHHHHCCEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCC
IGYIAAHSAIVLICLGGLLDGDLIVRAQMWLGGKAPYTGGGMVSEVGAEHRLSERNPTFR
CHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCCHHHHHCHHHHHHCCCCCEE
GNLFVAEGTQSGTAILNQSDGVLLQELPFSIELKKFIVEHYSTGMPKLFASEIVIHDKAT
CCEEEEECCCCCCEEEECCCCEEHHHCCCCHHHHHHHHHHHCCCCCHHHHHHEEEECCCC
GESVPARVEVNHPASYRGIEIYQSSFDDGGSLLKLRAVPMAPGVRPFEVEGTVGGSTRIE
CCCCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCEEE
RAGTGDKGADAGQALTLEFTGLRTINVENFGAVPGTGGSGADVRKVDLRHSIESRLGAGN
CCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCC
KTATPKELRNVGPSVTYKLRDAAGQAREFHNYMLPVDTGDGQPVFLLGVRETPADPFRFL
CCCCHHHHHHCCCCEEEEEHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCCCCCCHHEE
RVPVDDQGRMDGFLRMRMALADPALREQAVRRYVAHAVDGSRPELADQLAQSTLRALSIF
ECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
AGAAEPGKTAAGSPQRGGLQAISEFMEANVPSAERERAGEVLIRILNGALFELAQLTRER
HCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGLAPLPQDEATRAFMTQAVLSLSDAQAYPAPMAFELADFKQVQASVFQVARAPGKNVVY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEH
LGCALLILGVFAMLYVRERRVWVWLAPAGNGDGADATMALSTNRKTLDGDREFARLTEKL
HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
IGARPHHGGITA
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA