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The map label for this gene is cc4 [H]

Identifier: 120609678

GI number: 120609678

Start: 1079750

End: 1080478

Strand: Direct

Name: cc4 [H]

Synonym: Aave_0984

Alternate gene names: 120609678

Gene position: 1079750-1080478 (Clockwise)

Preceding gene: 120609675

Following gene: 120609679

Centisome position: 20.17

GC content: 69.0

Gene sequence:

>729_bases
ATGGGGGTTAGCAGGGAGACGCCCGCGAAGTGCCGCATTGTAAGATTGACGGGCTTTGCGGCCCCCCTTCTACAACACAG
AACCCCCGATATGAAGAAACTGCTTGCTCCCATGCTGATGGCTGCCGCGCTGGCGGTGGCCGCCTTCCCGGCCTCGGCCC
AGGCACCCGCGGCGGGACAGAAGGCGGGCAAGCCGGACCTGGTCAAGGGCGAGGCCGGCTTCGCCACGGTGTGCGCGGCC
TGCCATGCGGCCGACGGCAACTCCACCATCGTGGCCAACCCCAAGCTGGCGCAGCAGCACCCCGAATACCTCGTCAAGCA
GCTGCAGGAGTTCAAGTCCGGCAAGCGCAGCGACCCGGTGATGCAGGGCATCGCCGCCACGTTGTCGGAAGACGACATGC
GCAACATCGCCTGGTGGGCGGCCGGCAAGCAGGCCAAGCCCGGCTTCGCCAAGGACAAGGACCTCGTCGCGCTGGGCGAG
CGCATCTACCGTGGCGGCATCGCCGACCGCAACATCGCCGCCTGCGCGGGCTGCCACAGCCCCAACGGAGCCGGCATCCC
GGCCCAGTACCCGCGCCTGTCGGGCCAGCATGCCGACTACACGGCCAAGCAGCTGGCCGCGTTCCGCGACGGCAAGCGCG
CCAACAGCGTGCAGATGACCCAGGTCGCCGCCAAGCTCAACGACCGCGAGATCCGCGCCGTGGCGGACTACATCGCCGGC
CTGCGCTGA

Upstream 100 bases:

>100_bases
GTGAGGAAGCGGGCCGTGTGCATCCATCCCACGGCGACCTTGGCGTCGGGTGCGGGCGGAAGCGAGCCAGCAACTGGCGC
ATGTGATGTAGTCGTCATAA

Downstream 100 bases:

>100_bases
ACTCCTTCCTCCCCGCGCACCCTGCGGGAATCCCGGGAGCCCCGGCGCTTGATTTGCGTCAAAATCCCCCCGGTTGGCCC
CCCGGCCTTCCGGAACCTGC

Product: class I cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MGVSRETPAKCRIVRLTGFAAPLLQHRTPDMKKLLAPMLMAAALAVAAFPASAQAPAAGQKAGKPDLVKGEAGFATVCAA
CHAADGNSTIVANPKLAQQHPEYLVKQLQEFKSGKRSDPVMQGIAATLSEDDMRNIAWWAAGKQAKPGFAKDKDLVALGE
RIYRGGIADRNIAACAGCHSPNGAGIPAQYPRLSGQHADYTAKQLAAFRDGKRANSVQMTQVAAKLNDREIRAVADYIAG
LR

Sequences:

>Translated_242_residues
MGVSRETPAKCRIVRLTGFAAPLLQHRTPDMKKLLAPMLMAAALAVAAFPASAQAPAAGQKAGKPDLVKGEAGFATVCAA
CHAADGNSTIVANPKLAQQHPEYLVKQLQEFKSGKRSDPVMQGIAATLSEDDMRNIAWWAAGKQAKPGFAKDKDLVALGE
RIYRGGIADRNIAACAGCHSPNGAGIPAQYPRLSGQHADYTAKQLAAFRDGKRANSVQMTQVAAKLNDREIRAVADYIAG
LR
>Mature_241_residues
GVSRETPAKCRIVRLTGFAAPLLQHRTPDMKKLLAPMLMAAALAVAAFPASAQAPAAGQKAGKPDLVKGEAGFATVCAAC
HAADGNSTIVANPKLAQQHPEYLVKQLQEFKSGKRSDPVMQGIAATLSEDDMRNIAWWAAGKQAKPGFAKDKDLVALGER
IYRGGIADRNIAACAGCHSPNGAGIPAQYPRLSGQHADYTAKQLAAFRDGKRANSVQMTQVAAKLNDREIRAVADYIAGL
R

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 25587; Mature: 25455

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSRETPAKCRIVRLTGFAAPLLQHRTPDMKKLLAPMLMAAALAVAAFPASAQAPAAGQ
CCCCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
KAGKPDLVKGEAGFATVCAACHAADGNSTIVANPKLAQQHPEYLVKQLQEFKSGKRSDPV
CCCCCCCEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHCHHHHHHHHHHHHCCCCCCHH
MQGIAATLSEDDMRNIAWWAAGKQAKPGFAKDKDLVALGERIYRGGIADRNIAACAGCHS
HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCC
PNGAGIPAQYPRLSGQHADYTAKQLAAFRDGKRANSVQMTQVAAKLNDREIRAVADYIAG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
LR
CC
>Mature Secondary Structure 
GVSRETPAKCRIVRLTGFAAPLLQHRTPDMKKLLAPMLMAAALAVAAFPASAQAPAAGQ
CCCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
KAGKPDLVKGEAGFATVCAACHAADGNSTIVANPKLAQQHPEYLVKQLQEFKSGKRSDPV
CCCCCCCEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHCHHHHHHHHHHHHCCCCCCHH
MQGIAATLSEDDMRNIAWWAAGKQAKPGFAKDKDLVALGERIYRGGIADRNIAACAGCHS
HHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCC
PNGAGIPAQYPRLSGQHADYTAKQLAAFRDGKRANSVQMTQVAAKLNDREIRAVADYIAG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
LR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]