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The map label for this gene is ydaM [H]

Identifier: 120609587

GI number: 120609587

Start: 969978

End: 971252

Strand: Direct

Name: ydaM [H]

Synonym: Aave_0893

Alternate gene names: 120609587

Gene position: 969978-971252 (Clockwise)

Preceding gene: 120609585

Following gene: 120609588

Centisome position: 18.12

GC content: 68.71

Gene sequence:

>1275_bases
ATGGGTCTTGGCAAATTCTGGGGTTCGCTGCAAACGCAGGGGGGCGGGCGTTTTTCCAACACGGAGGCGTTCTCTCCGAG
CGAGGCCTTTTCCGAATTCGGCGAATCCGCGCAATTCCGCGGCTCGGACCTGCAGGCCGCGCGCATCCTCGAGCGCCGGC
TGGGCCGCCCTTACCGGCGGATGGTGCCCGTGTTCCTGTGCGGGCTCTACCTGGTGTGCACGCTGGCGTTCTATGCGCTG
GGCATGGTGTCCGGGCCCCTGGTGCTCATGGTGGCGGCGCTGATCGCCTGCGGCATCGCGCTGGGCACGGCCTACATGCG
TTTCGGGCAGCCGGGGGAAGCGCTGGAGCCGGCACGCATGCGCGACCGGCAACTGCGCTTGCCGATCGTGGTGGCGTCCG
CGTCCACCCTGCTGCTCGTCTTCTACCTGGAGCCCGTCACGCAGATCGCGCTGGCGCCGTTCCTGTTCGTCGCCATGTCG
TACGGGCTGCTCACGCTGTCGCGCCGCACGGCCCTGCTGCTGTGCGGCGGCATCCTGGCCGGCTATGCGCTGGTGATGGG
GCTGCACTATGCCGAGCGCGAAGACGGTGTGCTGCTGCGCCTGGAGGCCCTGCATTTCGTGGCGCTCGCGCTGGCCCTGC
CGGCCTATGTCCTGCTGATGGGCCGCGTGCGGCTGCTGCACCGGCTGCTGCAGAAGACCAGCAGCGAGATGAAGTCCATC
GCGGAGAGCGCGCGCCTGGATGCGCTCGGCTGCCTGAACCGCCGCTCGATCCTCGCCGCGCTGGAAGAGCAGAAGCAGCT
GGCCGACGAGAGCGGCATCCCGCTGTGCCTGGCGGTGGTGGACCTCGACCATTTCAAGCGCATCAACGATGAAATGGGCC
ACCTGTGCGGCGACGAGGTGCTGCGCACCTTCTCGCAGCTGGCCCAGCAGATCGTGCGCGGCGACGATTTCTTCGGCCGC
TACGGTGGGGAGGAGTTTCTGCTGATCTTCCCGGCCACGCCCCTGCTGCCCGCGCTCAATACCTGCGAGCGCATCCGCTC
GCAGGTGGAGTCGCACGACTGGAAGGAGCCGCTGCGCGGGCGCGTCACGGTCTCGGTCGGCGTCACGCAGTACGTGCTGG
GCGAATCCGTGCTGGAGTTCTTCTCGCGCGCCGACACCGCCATGTACCTCGCCAAGCAGGGCGGGCGCAACCAGGTGGTG
GTGCAGGAGCCCGTGGGCGCCTTCGCCCCGACCGAGGCCGGCGAGCCGCAGGTGCCGGCGCACGGCTATTTCTGA

Upstream 100 bases:

>100_bases
GTAACATTCGGTAAGGCGATGTGCGCCGGCCGTAACGTCATTCAAGCAGTTCAAGCACGCCAGGCGATGGCCTGGCGGCG
TGGAGAGGGCATCCGTCGCT

Downstream 100 bases:

>100_bases
GCGCGCCGGGCAATGCCCGGGTCCGCGTCCCCTGCTTTTCATTTGCTGAAAATTTAAGCAGGTACAATCCCGCCTCTTTT
TTCTTCCGCCTGTTTTTTCA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MGLGKFWGSLQTQGGGRFSNTEAFSPSEAFSEFGESAQFRGSDLQAARILERRLGRPYRRMVPVFLCGLYLVCTLAFYAL
GMVSGPLVLMVAALIACGIALGTAYMRFGQPGEALEPARMRDRQLRLPIVVASASTLLLVFYLEPVTQIALAPFLFVAMS
YGLLTLSRRTALLLCGGILAGYALVMGLHYAEREDGVLLRLEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSI
AESARLDALGCLNRRSILAALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRGDDFFGR
YGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRGRVTVSVGVTQYVLGESVLEFFSRADTAMYLAKQGGRNQVV
VQEPVGAFAPTEAGEPQVPAHGYF

Sequences:

>Translated_424_residues
MGLGKFWGSLQTQGGGRFSNTEAFSPSEAFSEFGESAQFRGSDLQAARILERRLGRPYRRMVPVFLCGLYLVCTLAFYAL
GMVSGPLVLMVAALIACGIALGTAYMRFGQPGEALEPARMRDRQLRLPIVVASASTLLLVFYLEPVTQIALAPFLFVAMS
YGLLTLSRRTALLLCGGILAGYALVMGLHYAEREDGVLLRLEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSI
AESARLDALGCLNRRSILAALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRGDDFFGR
YGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRGRVTVSVGVTQYVLGESVLEFFSRADTAMYLAKQGGRNQVV
VQEPVGAFAPTEAGEPQVPAHGYF
>Mature_423_residues
GLGKFWGSLQTQGGGRFSNTEAFSPSEAFSEFGESAQFRGSDLQAARILERRLGRPYRRMVPVFLCGLYLVCTLAFYALG
MVSGPLVLMVAALIACGIALGTAYMRFGQPGEALEPARMRDRQLRLPIVVASASTLLLVFYLEPVTQIALAPFLFVAMSY
GLLTLSRRTALLLCGGILAGYALVMGLHYAEREDGVLLRLEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSIA
ESARLDALGCLNRRSILAALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEVLRTFSQLAQQIVRGDDFFGRY
GGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRGRVTVSVGVTQYVLGESVLEFFSRADTAMYLAKQGGRNQVVV
QEPVGAFAPTEAGEPQVPAHGYF

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=38.6740331491713, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=36.3057324840764, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=35.4285714285714, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082007, Length=228, Percent_Identity=32.8947368421053, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1786584, Length=162, Percent_Identity=32.0987654320988, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=34.3023255813954, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=35, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=30.6010928961749, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=32.1428571428571, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46513; Mature: 46382

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLGKFWGSLQTQGGGRFSNTEAFSPSEAFSEFGESAQFRGSDLQAARILERRLGRPYRR
CCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHH
MVPVFLCGLYLVCTLAFYALGMVSGPLVLMVAALIACGIALGTAYMRFGQPGEALEPARM
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
RDRQLRLPIVVASASTLLLVFYLEPVTQIALAPFLFVAMSYGLLTLSRRTALLLCGGILA
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYALVMGLHYAEREDGVLLRLEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSI
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AESARLDALGCLNRRSILAALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
LRTFSQLAQQIVRGDDFFGRYGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRG
HHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHCCCC
RVTVSVGVTQYVLGESVLEFFSRADTAMYLAKQGGRNQVVVQEPVGAFAPTEAGEPQVPA
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCC
HGYF
CCCC
>Mature Secondary Structure 
GLGKFWGSLQTQGGGRFSNTEAFSPSEAFSEFGESAQFRGSDLQAARILERRLGRPYRR
CCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHH
MVPVFLCGLYLVCTLAFYALGMVSGPLVLMVAALIACGIALGTAYMRFGQPGEALEPARM
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
RDRQLRLPIVVASASTLLLVFYLEPVTQIALAPFLFVAMSYGLLTLSRRTALLLCGGILA
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYALVMGLHYAEREDGVLLRLEALHFVALALALPAYVLLMGRVRLLHRLLQKTSSEMKSI
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AESARLDALGCLNRRSILAALEEQKQLADESGIPLCLAVVDLDHFKRINDEMGHLCGDEV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
LRTFSQLAQQIVRGDDFFGRYGGEEFLLIFPATPLLPALNTCERIRSQVESHDWKEPLRG
HHHHHHHHHHHHCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHCCCC
RVTVSVGVTQYVLGESVLEFFSRADTAMYLAKQGGRNQVVVQEPVGAFAPTEAGEPQVPA
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCC
HGYF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]