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The map label for this gene is rarD [H]

Identifier: 120609585

GI number: 120609585

Start: 968301

End: 969179

Strand: Direct

Name: rarD [H]

Synonym: Aave_0891

Alternate gene names: 120609585

Gene position: 968301-969179 (Clockwise)

Preceding gene: 120609584

Following gene: 120609587

Centisome position: 18.09

GC content: 73.61

Gene sequence:

>879_bases
ATGCAGACCGGCATCCTCTACGCCACGCTCGCTTATGTGACGTGGGGCGTCTTTCCCGTGTACTTCCACCAGGTGGCCTC
GGTGCCGGCGCTGGAGGTGGTGCTGCACCGCACGCTCTGGTCGATGGTGCTGCTGGCCGTGGTGCTGGCGGCGCGGCGGC
AGCTCGCCTGGGTGGCCGCGCTGCGCCGGCAGCCCCGGGTGGTGGCGGCCTTCCTGCTCTCGGCGCTGCTGCTGTCGGCC
AACTGGCTGATCTATGTCTGGGCGGTGCACCACCAGCACGTGGTGGATGCGAGCCTGGGCTACTTCATCCTGCCGCTGGT
GAACGTGGCCATGGGCTACGCCTTCCTGCACGAGCGCCCGCGCCCGGGCCAGTGGCTGGCGCTGGCCGTGGCCGCGGCCG
GCGTGCTGTGGCTCACCGTGCAGGCCGGCCGCCTGCCCTGGATCGCGCTGGTGCTGGCCCTCACCTTCGGCTTCTACGGC
CTGCTGCGCAAGACGGCGGTGCTGGGCGCCATGGAGGGCCTGGCCCTGGAGACGGCGCTGCTCGCGCCGCTGGCCGTGGG
CGGCCTCGCCTGGCTGGGCTGGACGGGGCAGGCCGCCTGGCGGACCGCGGACGCGGCCACGCTGGGCTGGCTGGTCGCGG
CCGGGCCGATCACCGCCATCCCGCTGCTGCTGTTCGCGGCAGGGGCGCGCCGCATCCCGCTGGCGACGATGGGCGTGCTG
CAGTACATCTCGCCCAGCCTGCAGTTCGCGCTGGGCGTGTGGCTGTTCGGCGAGGCGGTGCAGCCGGCCCGGCTGGCGGG
CTTCGTACTGATCTGGGCGGCGCTGGTGCTCTACACGCTCGAAGGCACCTGGCGGCGCCGGCGCGTGGCGGTGCCCTGA

Upstream 100 bases:

>100_bases
CCACATTCCCGTGATCGACGAGGAGCGGCGGCTGGTCGGCATCATCACCCAGTCGGACCTGGTGCGCGCGCTGCACCGGG
CCGTGCGCTAGCATCGACCC

Downstream 100 bases:

>100_bases
GCAGGGCGGGCTCCCTGCGCGAGCCCGGCGTTCAATGCACCATGGCTTTCGGCCAGAGGTACAGCAGGCCGCCGGTCATG
GCCAGGTAGCGCAGGAACTT

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MQTGILYATLAYVTWGVFPVYFHQVASVPALEVVLHRTLWSMVLLAVVLAARRQLAWVAALRRQPRVVAAFLLSALLLSA
NWLIYVWAVHHQHVVDASLGYFILPLVNVAMGYAFLHERPRPGQWLALAVAAAGVLWLTVQAGRLPWIALVLALTFGFYG
LLRKTAVLGAMEGLALETALLAPLAVGGLAWLGWTGQAAWRTADAATLGWLVAAGPITAIPLLLFAAGARRIPLATMGVL
QYISPSLQFALGVWLFGEAVQPARLAGFVLIWAALVLYTLEGTWRRRRVAVP

Sequences:

>Translated_292_residues
MQTGILYATLAYVTWGVFPVYFHQVASVPALEVVLHRTLWSMVLLAVVLAARRQLAWVAALRRQPRVVAAFLLSALLLSA
NWLIYVWAVHHQHVVDASLGYFILPLVNVAMGYAFLHERPRPGQWLALAVAAAGVLWLTVQAGRLPWIALVLALTFGFYG
LLRKTAVLGAMEGLALETALLAPLAVGGLAWLGWTGQAAWRTADAATLGWLVAAGPITAIPLLLFAAGARRIPLATMGVL
QYISPSLQFALGVWLFGEAVQPARLAGFVLIWAALVLYTLEGTWRRRRVAVP
>Mature_292_residues
MQTGILYATLAYVTWGVFPVYFHQVASVPALEVVLHRTLWSMVLLAVVLAARRQLAWVAALRRQPRVVAAFLLSALLLSA
NWLIYVWAVHHQHVVDASLGYFILPLVNVAMGYAFLHERPRPGQWLALAVAAAGVLWLTVQAGRLPWIALVLALTFGFYG
LLRKTAVLGAMEGLALETALLAPLAVGGLAWLGWTGQAAWRTADAATLGWLVAAGPITAIPLLLFAAGARRIPLATMGVL
QYISPSLQFALGVWLFGEAVQPARLAGFVLIWAALVLYTLEGTWRRRRVAVP

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=289, Percent_Identity=39.1003460207612, Blast_Score=209, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31741; Mature: 31741

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGILYATLAYVTWGVFPVYFHQVASVPALEVVLHRTLWSMVLLAVVLAARRQLAWVAA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRQPRVVAAFLLSALLLSANWLIYVWAVHHQHVVDASLGYFILPLVNVAMGYAFLHERP
HHCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPGQWLALAVAAAGVLWLTVQAGRLPWIALVLALTFGFYGLLRKTAVLGAMEGLALETAL
CCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPLAVGGLAWLGWTGQAAWRTADAATLGWLVAAGPITAIPLLLFAAGARRIPLATMGVL
HHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHH
QYISPSLQFALGVWLFGEAVQPARLAGFVLIWAALVLYTLEGTWRRRRVAVP
HHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MQTGILYATLAYVTWGVFPVYFHQVASVPALEVVLHRTLWSMVLLAVVLAARRQLAWVAA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRRQPRVVAAFLLSALLLSANWLIYVWAVHHQHVVDASLGYFILPLVNVAMGYAFLHERP
HHCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RPGQWLALAVAAAGVLWLTVQAGRLPWIALVLALTFGFYGLLRKTAVLGAMEGLALETAL
CCCHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPLAVGGLAWLGWTGQAAWRTADAATLGWLVAAGPITAIPLLLFAAGARRIPLATMGVL
HHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHH
QYISPSLQFALGVWLFGEAVQPARLAGFVLIWAALVLYTLEGTWRRRRVAVP
HHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA