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The map label for this gene is yobV [H]

Identifier: 120608950

GI number: 120608950

Start: 277097

End: 277780

Strand: Direct

Name: yobV [H]

Synonym: Aave_0247

Alternate gene names: 120608950

Gene position: 277097-277780 (Clockwise)

Preceding gene: 120608949

Following gene: 120608951

Centisome position: 5.18

GC content: 71.93

Gene sequence:

>684_bases
ATGCGCCGTGCAGACCGCCTGTTCCAGATCGTCCAGCTCGTCCGGGGCCGGCGGCTCTCCACCGCCGAATTCCTCGCCGC
CCGGCTGGAGGTGTCGGTCCGCACCATCTACCGCGACGTGGCCGATCTGCAGCGCCAGGGCGTGCCGATCGAGGGCGAGG
CGGGGGTAGGCTACCGGCTGGGCGCGGGGTTCGAGTTGCCGCCGCTCATGTTCAGCCAGGGCGAGGCCGATGCGCTCGTG
GCTGCCGCGCGGCTCGCGCAGGCCTGGCTCGATCCGGCGATGGCCCTGCAGATGGAAGGCGCGCTCGGCAAGATCCTGTC
GGTGCTGCCGCCCGCCGCGCGCGCGGCTGCAGAATCCCAGGCGCTCTATGCACCGGGCCCAGGCATGGACGACCGCACCC
AGGCTCTGCTCATGCCATTGCGTGAAGCCGTGCAGGCCCGGCGCATCGCATGTATCGACTATGCCGACGAACAGGGCCGC
GCGAGCGCGCGGCGCATCCGGCCGCTGGGCTGCTTTTTCTGGGGCAAGGTCTGGACCGTGGCCGCCTGGTGCGAACTGCG
GCAGGACTTCCGGGGTTTCCGCATCGACCGCATCGCGGCGCTGCGCGTGCTGGACGAGCGTTTCCCCCTGCAGCCGGGCC
GGACGCTGGCAGACCTGCTGCGGCAGGTCCGGGGCCAGGGCTGA

Upstream 100 bases:

>100_bases
GCGGTGTGCCGTGATTACCTGGCCCTGATGGAGCCGGGCAGCGCCCACCTGGGCTTCTGGTCACGCGCCGCATAGGCAGG
CAGCCTTCCACGCTTCCTTA

Downstream 100 bases:

>100_bases
GAGAGTCCGGCACGCCCGGAGGGACGGCAGACTCCAGCGGGGCCCTGTCCCTGACGGCGTGAAAACGATGCAGTGACCAG
GCGTAAAACGCGTCCTTTGC

Product: helix-turn-helix, type 11 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRRADRLFQIVQLVRGRRLSTAEFLAARLEVSVRTIYRDVADLQRQGVPIEGEAGVGYRLGAGFELPPLMFSQGEADALV
AAARLAQAWLDPAMALQMEGALGKILSVLPPAARAAAESQALYAPGPGMDDRTQALLMPLREAVQARRIACIDYADEQGR
ASARRIRPLGCFFWGKVWTVAAWCELRQDFRGFRIDRIAALRVLDERFPLQPGRTLADLLRQVRGQG

Sequences:

>Translated_227_residues
MRRADRLFQIVQLVRGRRLSTAEFLAARLEVSVRTIYRDVADLQRQGVPIEGEAGVGYRLGAGFELPPLMFSQGEADALV
AAARLAQAWLDPAMALQMEGALGKILSVLPPAARAAAESQALYAPGPGMDDRTQALLMPLREAVQARRIACIDYADEQGR
ASARRIRPLGCFFWGKVWTVAAWCELRQDFRGFRIDRIAALRVLDERFPLQPGRTLADLLRQVRGQG
>Mature_227_residues
MRRADRLFQIVQLVRGRRLSTAEFLAARLEVSVRTIYRDVADLQRQGVPIEGEAGVGYRLGAGFELPPLMFSQGEADALV
AAARLAQAWLDPAMALQMEGALGKILSVLPPAARAAAESQALYAPGPGMDDRTQALLMPLREAVQARRIACIDYADEQGR
ASARRIRPLGCFFWGKVWTVAAWCELRQDFRGFRIDRIAALRVLDERFPLQPGRTLADLLRQVRGQG

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 25158; Mature: 25158

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRADRLFQIVQLVRGRRLSTAEFLAARLEVSVRTIYRDVADLQRQGVPIEGEAGVGYRL
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
GAGFELPPLMFSQGEADALVAAARLAQAWLDPAMALQMEGALGKILSVLPPAARAAAESQ
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
ALYAPGPGMDDRTQALLMPLREAVQARRIACIDYADEQGRASARRIRPLGCFFWGKVWTV
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHCHHHHHHHHHHHHH
AAWCELRQDFRGFRIDRIAALRVLDERFPLQPGRTLADLLRQVRGQG
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRRADRLFQIVQLVRGRRLSTAEFLAARLEVSVRTIYRDVADLQRQGVPIEGEAGVGYRL
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
GAGFELPPLMFSQGEADALVAAARLAQAWLDPAMALQMEGALGKILSVLPPAARAAAESQ
CCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
ALYAPGPGMDDRTQALLMPLREAVQARRIACIDYADEQGRASARRIRPLGCFFWGKVWTV
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHCHHHHHHHHHHHHH
AAWCELRQDFRGFRIDRIAALRVLDERFPLQPGRTLADLLRQVRGQG
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]