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The map label for this gene is asnC [C]

Identifier: 120608830

GI number: 120608830

Start: 134688

End: 135215

Strand: Direct

Name: asnC [C]

Synonym: Aave_0122

Alternate gene names: 120608830

Gene position: 134688-135215 (Clockwise)

Preceding gene: 120608827

Following gene: 120608831

Centisome position: 2.52

GC content: 67.8

Gene sequence:

>528_bases
GTGCATCAATCCAAATCGCCAGGATTGACCGCAATTGCGCAGAAAGCTGGCGTTATGGCAGCATTCGTTGACACTATGGA
CAACATCGACCGGCAACTCATCGCCGCCCTGCGCCACAACGCCCGCGCCAGCGTGGCGACGCTGGCAACGCGCCTGGGCG
TGTCGCGCGGCACGGTCACCAACCGCATCCGCAAGCTGGAGGACGCGGGAACGATCGTCGGCTACACCGTGCGGTTGCGG
CCGGAGGGGGAAACCGGTGGCCTGCAGGCCTGGATGAGCATTTCCATCGAGGGCAACGACGCGCGCCGCGTCACCGCCTC
GCTGCTGGGCGAGCCGAGCGTGCTGTCCCTGCACGCCACCAACGGCCAGTGGGATCTCCTGGCCGAACTGCAGGTCGCGT
CCCTGGCCGAGCTGGCCCAGGCGCTGGAGCGCATCCGGCTCATCAAGGGCATCCGCAACACGGAAACGAGCATCCACCTG
GAAACCCTGCGCGCGTCGCCCCAGCAGGCTCCGGGCGCGCGCCGGTAG

Upstream 100 bases:

>100_bases
AGGAATTCGGTGGATCCGGTGCGGCGCAGGGCGGGGCGAAAGGTATGGGTGCGGTCCATGGCATGCCTCTTCGGTGCTGG
TGTACGAGGTTCCCACAGGC

Downstream 100 bases:

>100_bases
GACATACCTGACGAGGCCCGCGCCGGCCCCGTCCCATAATCGGCCAACGGCCCCGCGCCGCAGCATCCGCAGGAAACTGC
CAGGAAGGAAAGACCGCCCA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MHQSKSPGLTAIAQKAGVMAAFVDTMDNIDRQLIAALRHNARASVATLATRLGVSRGTVTNRIRKLEDAGTIVGYTVRLR
PEGETGGLQAWMSISIEGNDARRVTASLLGEPSVLSLHATNGQWDLLAELQVASLAELAQALERIRLIKGIRNTETSIHL
ETLRASPQQAPGARR

Sequences:

>Translated_175_residues
MHQSKSPGLTAIAQKAGVMAAFVDTMDNIDRQLIAALRHNARASVATLATRLGVSRGTVTNRIRKLEDAGTIVGYTVRLR
PEGETGGLQAWMSISIEGNDARRVTASLLGEPSVLSLHATNGQWDLLAELQVASLAELAQALERIRLIKGIRNTETSIHL
ETLRASPQQAPGARR
>Mature_175_residues
MHQSKSPGLTAIAQKAGVMAAFVDTMDNIDRQLIAALRHNARASVATLATRLGVSRGTVTNRIRKLEDAGTIVGYTVRLR
PEGETGGLQAWMSISIEGNDARRVTASLLGEPSVLSLHATNGQWDLLAELQVASLAELAQALERIRLIKGIRNTETSIHL
ETLRASPQQAPGARR

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=138, Percent_Identity=30.4347826086957, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18825; Mature: 18825

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQSKSPGLTAIAQKAGVMAAFVDTMDNIDRQLIAALRHNARASVATLATRLGVSRGTVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHH
NRIRKLEDAGTIVGYTVRLRPEGETGGLQAWMSISIEGNDARRVTASLLGEPSVLSLHAT
HHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCEEEEEEC
NGQWDLLAELQVASLAELAQALERIRLIKGIRNTETSIHLETLRASPQQAPGARR
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCCC
>Mature Secondary Structure
MHQSKSPGLTAIAQKAGVMAAFVDTMDNIDRQLIAALRHNARASVATLATRLGVSRGTVT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHH
NRIRKLEDAGTIVGYTVRLRPEGETGGLQAWMSISIEGNDARRVTASLLGEPSVLSLHAT
HHHHHHHCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCEEEEEEC
NGQWDLLAELQVASLAELAQALERIRLIKGIRNTETSIHLETLRASPQQAPGARR
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]